Just shipped v0.1.0 of CellSeg — an open-source Android app that runs Cellpose cell segmentation on-device

Free, MIT-licensed, no ads, no tracking. ~14 MB cyto3 ONNX model, runs fully offline after first download. Optional Cellpose-SAM cloud fallback via Hugging Face for harder cases

Written up the launch with the architecture, the licensing chapter, and an honest list of what v0.1.0 isn't yet:

https://kemal.yaylali.uk/cellseg-v0-1-0-is-out/

#bioinformatics #microscopy #cellpose #android #buildinpublic #opensource

Working with data from Metabolomics Workbench again, and it always feels like the data is yelling at me with the fields in all caps.

Now that I've double checked, the Protein Data Bank file format was like this too, all caps everywhere (even more so).

#metabolomics #bioinformatics

🚀 Registration is OPEN for the de.NBI Summer School 2026 - Bioinformatics for Proteomics."! 🧬

🙌 Fully Supported:
We are happy to share that there are no fees for the event. To fully support the stay of the selected candidates, we will provide accommodation and local travel tickets within Bochum. Furthermore, meals and social events are included in the program.

📅 7-11 September
📍 Bochum, Germany
🔗 Apply here: https://www.denbi.de/training-courses-2026/2075-de-nbi-summer-school-2026-bioinformatics-for-proteomics

#Bioinformatics #Proteomics #SummerSchool -MS

RE: https://genomic.social/@mdziemann/116436554148418446

Last chance to register for our workshop on reproducible pathway enrichment analysis. There are 2 sessions, 1st one is focused on GUI-web tools and 2nd will be based on R Markdown. We'll also be discussing best practices from our related article in PLOS Comp Biol
Register here: https://tinyurl.com/ye262hzx
#Bioinformatics #genomics

AI Scrutinizes Cellular Interactions, Weaving Fragmented Data into Coherent Tissue Maps

AI tools like NicheCompass analyze cell data to map interactions in tissues, helping cancer research. See how it works and what it means for patients.

#AICancerResearch, #CellularMapping, #NicheCompass, #Bioinformatics, #TissueAtlas

https://newsletter.tf/ai-maps-cell-interactions-tissue-maps-cancer/

AI can now map millions of cells and their 'conversations' in tissues. This is like creating a detailed map of how cells work together, which is vital for understanding diseases like cancer.

#AICancerResearch, #CellularMapping, #NicheCompass, #Bioinformatics, #TissueAtlas
https://newsletter.tf/ai-maps-cell-interactions-tissue-maps-cancer/