de.NBI & ELIXIR Germany

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The de.NBI network provides bioinformatics services and comprehensive compute resources to researchers in the life sciences and biomedicine in Germany and Europe. Since August 2016 the German Node of ELIXIR, ELIXIR Germany, is run by de.NBI partners.

Missed the webinar? The recording is now live! ๐ŸŽฅ

Watch our deep dive into MAPtoGO to learn how to bridge the gap between lipidomics and functional biology. ๐Ÿงฌ๐Ÿ“Š

Watch it here: https://www.youtube.com/watch?v=2Jk60rpZFsA

Co-organised by @ghga & @deNBI

#Lipidomics #Multiomics

Enhancing Gene Ontology for Medical Lipidomics with Dominik Kopczynski

YouTube

๐Ÿ”ฌ LIFS Lipidomics Workshop 2026 ๐Ÿ”ฌ

Ready to elevate your lipidomics data analysis? Join us for this comprehensive, hands-on training course hosted in-person at the 11th Lipidomics Forum in Borstel!

๐Ÿ“… Date: Monday, September 7th, 2026
โฐ Time: 10:00 โ€“ 16:30 CEST
๐Ÿ“ Location: On-site (Borstel, DE)
๐Ÿ’ถ Fee: 20 โ‚ฌ

๐Ÿ’ก What You Will Learn
- Shotgun Lipidomics
- Targeted LC-MS
- FAIR Data & Analytics

๐Ÿ“ Registration:
https://www.denbi.de/training-courses-2026/2092-lifs-training-workshop-lipidomics-forum-2026

#Lipidomics #MassSpectrometry #Bioinformatics #FAIRdata #LCMS

Service of the week:
Looking for a trusted home for your plant research data? ๐ŸŒฟ

e!DAL-PGP offers free, long-term, FAIR-compliant storage for multi-omics and phenotyping datasets.

๐Ÿš€ Free for academic use.
๐Ÿ“ Hosted by @leibnizipk

โžก๏ธ https://edal.ipk-gatersleben.de/

#PlantResearch #Phenotyping #Bioinformatics #eDAL #RDM #DataManagement

๐ŸŽฅ New Video: Cloud-based Bioimage Analysis at EMBL

How do we handle the massive data volumes in modern microscopy? Yi Sun (Research Software Engineer at EMBL) breaks down the cloud-native workflows used by the Bioimage Analysis Support Team.

๐Ÿ“บ Watch the full webinar: https://www.youtube.com/watch?v=ntwdwCi4Y6k

A great joint effort by @deNBI and @ghga

#Bioinformatics #BioimageAnalysis #EMBL #CloudComputing #OpenScience #Imaging #deNBI #GHGA

Cloud-based Bioimage Analysis at EMBL with Yi Sun

YouTube

๐Ÿ‡ฎ๐Ÿ‡น Greetings from Rome!

Last week, the HUPO-PSI Spring Meeting at the CNR brought together the global community to advance open data standards for #proteomics and #metabolomics. ๐Ÿงฌ

@deNBI was thrilled to be part of the discussions! We organized a successful workshop Metabolomics & MS Data Standards fostering collaboration across the field. ๐Ÿค

Standardization is key to reproducible science! ๐Ÿš€

#HUPOPSI #OpenData #Bioinformatics #deNBI #Metabolomics #MassSpec #FAIRdata #ScienceEvents

๐ŸŒฑ #ECCB2026 is committed to hosting a responsible and forwardโ€‘looking conference in Geneva.
Sustainability is integrated into the planning and delivery of the conference, guided by SIB's EcoImpact Groupโ€™s sustainability guidance.

Our approach includes walkable venues, public transport, reduced print, reduced plastic and vegetarian catering, supporting lower environmental impact while creating longโ€‘term value for our community and host city #Geneva.

๐Ÿ‘‰Learn more: https://eccb2026.org/sustainability-and-environmental-impact

๐Ÿš€ Registration is OPEN for the de.NBI Summer School 2026 - Bioinformatics for Proteomics."! ๐Ÿงฌ

๐Ÿ™Œ Fully Supported:
We are happy to share that there are no fees for the event. To fully support the stay of the selected candidates, we will provide accommodation and local travel tickets within Bochum. Furthermore, meals and social events are included in the program.

๐Ÿ“… 7-11 September
๐Ÿ“ Bochum, Germany
๐Ÿ”— Apply here: https://www.denbi.de/training-courses-2026/2075-de-nbi-summer-school-2026-bioinformatics-for-proteomics

#Bioinformatics #Proteomics #SummerSchool -MS

๐Ÿงฌ Join us in Heidelberg to master the art of building biomedical knowledge graphs! ๐Ÿงช๐Ÿ’ป

๐Ÿ“… 15-19 June 2026
๐Ÿ“ Im Neuenheimer Feld 205, Heidelberg

What youโ€™ll learn:
- Create KGs from your own data using BioCypher.
- Scale complex projects with Generative AI and agentic automation.

Don't miss out on this deep dive into ontologies, data harmonization, and machine-readable knowledge! ๐Ÿš€

https://www.denbi.de/training-courses-2026/2089-establishing-a-knowledge-graph-community-in-biomedical-science

#Bioinformatics #KnowledgeGraph #OpenScience #GenerativeAI #Python #MultiOmics

๐Ÿ”ฌ New in Nature Medicine: Obesity Risk Prediction at Scale ๐Ÿงฌ

We are thrilled to see the de.NBI Cloud acknowledged in a major new study published in @naturemedicine Researchers analyzed data from ~200,000 individuals to improve obesity risk prediction.

๐Ÿ–ฅ๏ธ The Infrastructure:
The authors utilized the de.NBI Cloud to develop the webserver infrastructure necessary to handle this massive dataset and make the findings accessible to the research community.

๐Ÿ”— Read the paper: https://www.nature.com/articles/s41591-026-04353-2

Data-driven prioritization of high-risk individuals for weight loss interventions - Nature Medicine

OBSCORE is a machine learning-based risk prediction tool that uses a set of clinical features to stratify individuals with a body mass index (BMI) ofโ€‰โ‰ฅโ€‰27โ€‰kgโ€‰mโˆ’2 by their 10-year risk of obesity-related complications, outperforming existing models. OBSCORE is generalizable across diverse populations, supporting risk-based prioritization of obesity interventions that goes beyond simple BMI thresholds.

Nature

๐Ÿ“ฃ Enter the Galaxy: How to leverage the open source platform Galaxy for the Digital Humanities and Social Sciences

None

๐Ÿ“ Online
๐Ÿ“… 8 May 2026
๐Ÿ”— More info & registration: https://galaxyproject.org/events/2026-05-08-dhxpresso/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway #UniFreiburg

Enter the Galaxy: How to leverage the open source platform Galaxy for the Digital Humanities and Social Sciences

Galaxy Community Hub