sayzardReddit 게시물: 한 사용자가 AI 모델 Claude의 도움으로 실험 경험 없이 집에서 웻랩을 구축하고 전체 유전체를 시퀀싱했다고 주장. 댓글들은 실제 시퀀싱은 Oxford Nanopore의 MinION 등 장비가 중심이며(비용 약 $5k), AI가 접근성을 낮추지만 데이터 품질·분석 난이도·생물보안 우려가 함께 제기된다고 논쟁함.
nf-corePipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0
#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
naturepokerPerformance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
Christos ArgyropoulosI went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
Christos Argyropoulos MD, PhDI went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
Christos Argyropoulos MD, PhD, FASN 🇺🇸 0kale/accI went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
Christos Argyropoulos MD PhDI went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
de.NBI & ELIXIR Germany🧬 DNA Day is tomorrow, April 25! A perfect time to think about sequence data.
Our Nanopore workshop (30 June – 2 July) takes you from library prep to (meta)genome assemblies and MAGs. No prior bioinformatics experience required.
#DNADay #Bioinformatics #Nanopore #Bielefeld #LifeScience #Metagenomics
Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0
#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
Mihail ZdravkovDear Nanopore folks, could you give an advice about an issue that my lab has with direct RNA sequencing on MinION. We're doing RNA004 sequencing of various samples and again and again, there's a staggering amount of reads with just repetitive AAG triplet. This happens for weird IVT RNA and perfectly normal yeast or HEK cells. I'm using Dorado 1.4.0 with the 5.3.0 sup model. Looks to me like the open channel or some kind of stalling is just called as this kmer.
#nanopore #nanoporesequencing
#nanopore #nanoporesequencing