Voor de groei van planten zijn water, zonlicht en nutriënten onontbeerlijk. Steeds duidelijker wordt dat ook een gezonde bodem met een gezond microbioom van essentieel belang is om de planten goed te laten opgroeien.

Lector Green Biotechnology Nelleke Kreike en associate lector Levende Plantenteeltsystemen Frank van der Helm van Hogeschool Inholland werken samen in het bodemmicrobioom-project.

Lees er alles over in ons artikel: https://publinova.nl/article/nanopore-sequencing-wat-leeft-er-in-de-bodem

#praktijkgerichtonderzoek #DNA #nanopore

Pipeline release! nf-core/detaxizer v1.2.0 - detaxizer 1.2.0 - Kunschd!

Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.2.0

#deidentification #decontamination #edna #fastq #filter #longreads #metabarcoding #metagenomics #microbiome #nanopore #shortreads #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

new solid-state #nanopore

`This diode exhibits rectified interlayer tunneling currents modulated by ionic potential, while the heterojunction potential reciprocally rectifies ionic transport through the nanopore. We achieve concurrent detection of DNA translocation using both ionic and diode currents and demonstrate a 2.3-fold electrostatic slowing of average translocation speed. `

https://www.pnas.org/doi/10.1073/pnas.2422135122

Pipeline release! nf-core/scnanoseq v1.2.0 - nf-core/scnanoseq v1.2.0 - Copper Rhinoceros!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

🧬 Can advanced sequencing technologies bring clarity to genetic variants once deemed uncertain?

🔗 Combining long-read DNA and RNA sequencing to enhance molecular understanding of structural variations leading to copy gains. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.04.031

📚 CSBJ: https://www.csbj.org/

#Genomics #StructuralVariants #LongReadSequencing #RareDisease #PrecisionMedicine #RNAseq #Nanopore #GeneticDiagnostics #NanoporeSequencing #Transcriptomics

Pipeline release! nf-core/mag v4.0.0 - mag 4.0.0 - Blue Huemul!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/4.0.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

It’s really interesting to me how similar ONT and Apple are with their presentations and UX 🍎

#nanoporeconf #nanopore #ONT #londoncalling #apple

Question for #nanopore folks. I'm comparing collaborator's BAM vs mine, generated from same pod5. It looks like the collaborator's BAM has an extra qs: tag missing in mine.

Why would there be a difference? One would think default pod5 commands would record same tags for all output BAM?

#bioinformatics