nf-core6h ago

Pipeline release! nf-core/lsmquant v1.0.1 - Excited Squid Patch!
A pipeline for processing and analysis of light-sheet microscopy images.
Please see the changelog: https://github.com/nf-core/lsmquant/releases/tag/1.0.1

#3dunet #imageanalysis #imageprocessing #lightsheetmicrocopy #segmentation #stitching #nfcore #openscience #nextflow #bioinformatics

Release Excited Squid Patch · nf-core/lsmquant

Fixed PR#57 - Fix input declaration of the model file for the module: numorph3dunet to be reused for all inputs. Remove conda batch from readme, the pipeline does not support conda. PR#66 - Set ma...

GitHub
nf-core8h ago

Pipeline release! nf-core/rnafusion v4.1.3 - 4.1.3!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.3

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Release 4.1.3 · nf-core/rnafusion

What's Changed Fusionreport Fixes (Cosmic etc pp) by @apeltzer in #815 make fasta input of star a value channel by @nvnieuwk in #816 Bump 4.1.3 by @apeltzer in #818 PR for 4.1.3 release by @apelt...

GitHub
nf-core1d ago

Pipeline release! nf-core/magmap v1.1.0 - nf-core/magmap v1.1.0!
Best-practice analysis pipeline for mapping reads to a (large) collections of genomes
Please see the changelog: https://github.com/nf-core/magmap/releases/tag/1.1.0

#nfcore #openscience #nextflow #bioinformatics

Release nf-core/magmap v1.1.0 · nf-core/magmap

What's Changed Fix saving of samtools output by @erikrikarddaniel in #178 Fix/bakta gff compatibility by @Laurenz0908 in #181 Template 3.5.2, Nextflow lint and version topic channels by @erikrikar...

GitHub
Jorge2d ago
Aprovechando el fresquito para jugar a que #Nextflow me busque exoplanetas usando datos de la NASA, ahí es nada



https://github.com/jagedn/search-planetas
nf-core4d ago

Pipeline release! nf-core/pixelator v4.1.1 - nf-core/pixelator 4.1.1!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.1.1

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 4.1.1 · nf-core/pixelator

[4.1.1] - 2026-05-29 Enhancements & fixes Improve documentation by @Aratz #216 Update pixelator by @Aratz #217 Software dependencies Dependency Old version New version pixelator 0.27.1 0.27.2

GitHub
nf-core5d ago

Pipeline release! nf-core/pixelator v4.1.0 - nf-core/pixelator 4.1.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.1.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 4.1.0 · nf-core/pixelator

[4.1.0] - 2026-05-28 Enhancements & fixes Update pixelator container to 0.27.1 by @johandahlberg #212 Denoise graph before sample calling step by @Aratz #212 Add ACE and PLS denoising by @Aratz #2...

GitHub
nf-coreMay 25

Pipeline release! nf-core/pixelator v4.0.0 - nf-core/pixelator 4.0.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 4.0.0 · nf-core/pixelator

[4.0.0] - 2026-05-19 Added Add Proxiome V2 workflow support, enabling sample pooling and processing of up to 8,000 cells per run by @Aratz #204, #205 Enhancements & fixes Use nextflow strict syn...

GitHub
nf-coreMay 23

Pipeline release! nf-core/pairgenomealign v2.2.3 - nf-core/pairgenomealign v2.2.3 – Reitou mikan!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.3

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v2.2.3 – Reitou mikan · nf-core/pairgenomealign

v2.2.3 "Reitou mikan" - [May 20th 2026] Fixed Conforms to nf-core template version 4.0.2 (#107). Improve description of what the pipeline does and how (#108). Dependencies Dependency Old versi...

GitHub
nf-coreMay 21

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Release 3.2.0 - Solitude · nf-core/mhcquant

Added Added support for single run quantification #438 Added per-sample search parameter support via samplesheet with SearchPreset column #439 Added PRIDE ID and SDRF sheet support #445 Added ion ...

GitHub
nf-coreMay 20

Pipeline release! nf-core/rnafusion v4.1.2 - 4.1.2!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.2

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics