Pipeline release! nf-core/pairgenomealign v2.2.2 - nf-core/pairgenomealign v2.2.2 – Juicy!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.2
#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v2.2.0 – Chagara ponzu · nf-core/pairgenomealign
v2.2.0 "Chagara ponzu" - [May 29th 2025]
Added
Support for export to BAM and CRAM formats (#31) (#43).
SAM/BAM/CRAM alignments files are sorted and their header features all sequences of the targe...
GitHub
Release nf-core/pairgenomealign v2.0.0 – Naga imo · nf-core/pairgenomealign
v2.0.0 "Naga imo" - [February 5th, 2025]
Breaking changes
The LAST software was updated and it has new defaults for some of its
parameters. The alignments ran with this pipeline will not be identi...
GitHub
Release nf-core/pairgenomealign v1.1.1 – Kani nabe · nf-core/pairgenomealign
This release brings the pipeline to the standards of Nextflow 24.10.1 and nf-core 3.1.0. No changes were made to the alignment process.
GitHub