Pipeline release! nf-core/funcscan v4.0.0 - v4.0.0 - Chinese Baozi - 2026-06-27!
(Meta-)genome screening for functional and natural product gene sequences
Please see the changelog: https://github.com/nf-core/funcscan/releases/tag/4.0.0
#amp #amr #antibioticresistance #antimicrobialpeptides #antimicrobialresistancegenes #arg #assembly #bgc #biosyntheticgeneclusters #contigs #function #metagenomics #naturalproducts #screening #secondarymetabolites #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/metatdenovo v1.4.0 - Download improvements and more!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.0
#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1
#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
Call for Papers:
Omics and Metabolic Networks in Microbial Xenobiotic Degradation and Detoxification.
Special Issue aims to bring together research and reviews that integrate omics data, metabolic network analysis, and ecological perspectives to elucidate microbial mechanisms involved in xenobiotic degradation and detoxification.
#Xenobiotics #biodegradation #Metagenomics #SystemsBiology #environment #Bioremediation #ecology
Last year, we published our paper on two-step metagenomic classification. The next stage of this work is now starting to bear fruit. In experiments, we have seen the read classification rate of randomly selected SRA samples go up from 74% to 97%.
📢 Last day to register for SPAAM8!
Join us for the ICP2026 satellite hybrid meeting on 22 June 2026 in Stockholm 🇸🇪
🧬 Ancient metagenomics community gathering in person or online!
🔗 Register here before June 10th: https://forms.gle/Z1AK5MHaFEfbYdydA
We look forward to seeing you! 🔥
Date June 22nd, 2026 (prior to ICP 2026) 9:30 AM Location Stockholm University, Stockholm, Sweden In-person attendance fee: €25. A payment link will be sent to all registered participants in the coming days. Includes coffee, snacks and catering throughout the day. No attendance fee is requested for online participants. Deadline to register: Wednesday 10th of June, 2026 The full schedule will be finalised by the 12th of June.
Want a hands-on introduction to metagenomics analysis in Galaxy?
This Galaxy Training Network tutorial walks learners through the “global picture” of metagenomics data analysis, including the differences between amplicon and shotgun approaches, how to choose appropriate tools, and how to visualize microbial community structure.
Start learning: https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/general-tutorial/tutorial.html
#GalaxyProject #GalaxyTraining #Microbiome #Metagenomics #Bioinformatics #OpenScience
A microbiome is the community of microorganisms that can usually be found living together in any given habitat. Microbiome research has grown substantially over the past decade in terms of the range of biomes sampled, identified taxa, and the volume of data derived from the samples.
nf-core
SPAAM-community
de.NBI & ELIXIR Germany
David Ojcius
Johan Nyström-Persson
galaxyproject