My undergrad student's first PR for #nfcore has just been accepted 🥳

https://github.com/nf-core/modules/pull/11108

Add metamap for input/output in stringtie/merge by Odulhin · Pull Request #11108 · nf-core/modules

Summary Add a metamap for input, output instead of the previous harcoded ones Modify related subworkflow : bam_stringtie_merge Update snapshots Closes #8686

GitHub

Pipeline release! nf-core/drop v1.0.0 - 1.0.0 - Red Dragon!
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Please see the changelog: https://github.com/nf-core/drop/releases/tag/1.0.0

#nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Release mag 5.4.2 - Yellow Frog patch · nf-core/mag

Added #1006 - Add citations and references texts in the utils_nfcore_mag_pipeline subworkflow (by @dialvarezs) Changed #1000 - Update GUNC modules and enable the tool in tests (by @dialvarezs) #...

GitHub

Pipeline release! nf-core/viralmetagenome v1.1.1 - v1.1.1 - Azure Albatross!
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Please see the changelog: https://github.com/nf-core/viralmetagenome/releases/tag/1.1.1

#epidemiology #fastq #ngs #viralmetagenomics #virology #virusgenomes #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/proteinfold v2.0.0 - Montseny Brook Newt!
Protein 3D structure prediction pipeline
Please see the changelog: https://github.com/nf-core/proteinfold/releases/tag/2.0.0

#alphafold2 #colabfold #esmfold #proteinfoldprediction #proteinfolding #proteinsequences #proteinstructure #nfcore #openscience #nextflow #bioinformatics

Release Montseny Brook Newt · nf-core/proteinfold

[2.0.0] - 2026-03-27 Enhancements & fixes [#177] - Fix typo in some instances of model preset alphafold2_ptm. [PR #178] - Enable running multiple modes in parallel. [#179] - Produce an interactive...

GitHub

#nfcore and #VirJenDB plan a hybrid #hackathon on 17 May as a satellite event of #ViBioM2026 toward #opensource #virus #bioinformatics workflows.

Proposed projects
- expand VirJenDB visualizations with an atlas
- work on an existing nf-core virus workflow
- port your tool to bioconda and other #Nextflow prep

👉 Propose your project and indicate your interest: https://forms.gle/KWJYPCXgGotmrhCu8.

📝 Registration opens April 2026! More: https://tinyurl.com/mefewbw4.

#EVBC #deNBI

Pipeline release! nf-core/ribomsqc vv1.0.0 - nf-core/ribomsqc v1.0.0!

QC pipeline that monitors mass spectrometer performance in ribonucleoside analysis

Please see the changelog: https://github.com/nf-core/ribomsqc/releases/tag/v1.0.0

#nfcore #openscience #nextflow #bioinformatics

Release nf-core/ribomsqc v1.0.0 · nf-core/ribomsqc

nf-core/ribomsqc: Changelog The format is based on Keep a Changelog and this project adheres to Semantic Versioning. v1.0.0 - 2026-03-11 Added #27 - Added new quantification markers to XIC line pl...

GitHub

Pipeline release! nf-core/longraredisease v1.0.0 - Longraredisease 1.0.0 !

Please see the changelog: https://github.com/nf-core/longraredisease/releases/tag/1.0.0

#nfcore #openscience #nextflow #bioinformatics

Release Longraredisease 1.0.0 · nf-core/longraredisease

First release

GitHub

Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics