Mastodawn

Editorial @SIB by @dessimoz
"we must ensure (Switzerland's) continued science leadership – including in data expertise and infrastructure"
https://www.sib.swiss/news/switzerlands-science-future-continued-leadership-or-drift-into-decline #Switzerland #SwissScience #DataScience #bioinformatics #ScienceFunding

Switzerland’s science future: continued leadership or drift into decline?

The United States offers a cautionary tale of how a leading science nation can face abrupt disruption. Switzerland has an opportunity to decisively strengthen its own science leadership&nbsp...

MottG 15h ago

(copied from post on X by Jure Leskovec)

Announcing Biomni — the first general-purpose biomedical AI agent. Biomni is a free web platform where biomedical scientists can immediately delegate their tasks to Biomni.

Biomni is an open-source initiative: we invite the community to build on it and advance biomedical research at scale.
- Try it now: https://biomni.stanford.edu
- Paper: https://biomni.stanford.edu/paper.pdf
- Code: https://github.com/snap-stanford/biomni

#research #medicine #AI4Science
#AItools #bioinformatics

Bioconductor 18h ago

🎓 Sharpen your RNA-seq skills at EuroBioC2025 Workshops!

📍 Barcelona | Bulk & Single-cell RNA-seq
📅 Sept 15–16 | Hands-on training
🎟️ Limited spots. Register now: eurobioc2025.bioconductor.org

#Bioinformatics #EuroBioC2025

CSBJ 1d ago

🧬 Why do humans think so differently from Neanderthals? The answer might lie in gene switches, not the genes themselves.

🔗 Evolution is in the details: Regulatory differences in modern human and Neanderthal. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.05.052

📚 CSBJ: https://www.csbj.org/

#Genomics #Neuroscience #Evolution #HumanOrigins #NeanderthalDNA #AutismResearch #HumanEvolution #GeneRegulation #Bioinformatics #ASD #RegulatoryGenomics #TranscriptionFactors

Dr. Thompson 1d ago

🧬 From 9,000 frames to 8 hours.
I thought Nellie was another overhyped lab tool—until it processed our entire experiment overnight.
This isn’t ChatGPT. This is the AI backbone every microscopy lab should know about.
💻 Real Python. Real results.
#AIinScience #MicroscopyTools #OpenSource #Bioinformatics
👉
https://medium.com/@rogt.x1997/my-two-month-lab-affair-with-nellie-the-ai-tool-that-rescued-my-microscopy-sanity-86b12cbfec4c

Dr. Thompson 1d ago

My Two-Month Lab Affair with Nellie: The AI Tool That Rescued My Microscopy Sanity

I sat slumped over the fluorescence scope, halfway through my sixth energy bar of the day. We were imaging endoplasmic reticulum dynamics for the third time this week, and the tracking software had…

Medium

Dr. Thompson 1d ago

Ideal for multi-network scheduling — short, punchy, visually clear.

🔬 One channel ➜ Three organelle maps
🧪 48% faster analysis
💻 Built by biologists, not engineers

Meet Nellie — your new lab partner who never sleeps, never crashes, and actually understands your z-stacks.
👇 Read how Nellie is transforming cell imaging labs worldwide:
https://medium.com/@rogt.x1997/beyond-the-microscope-how-nellie-quietly-became-biologys-most-helpful-lab-partner-cefcefc946e1

#MicroscopyAI #CellImaging #Bioinformatics #OpenScience
https://medium.com/@rogt.x1997/beyond-the-microscope-how-nellie-quietly-became-biologys-most-helpful-lab-partner-cefcefc946e1

Beyond the Microscope: How Nellie Quietly Became Biology’s Most Helpful Lab Partner

In a half-lit lab at 2 a.m., a fluorescent image of a cell fades onto the screen. The mitochondria look tired. The postdoc is more tired. There’s coffee on the table. Half a donut in the trash. And a…

Medium

CSBJ 1d ago

🧬 Are we overcomplicating proteomics—when a few unique sequences can tell the whole story?

🔗 Uniquome: Construction and decoding of a novel proteomic atlas that contains new peptide entities. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.05.027

📚 CSBJ: https://www.csbj.org/

#Proteomics #Uniquome #PeptideAtlas #Bioinformatics #PrecisionBiology #TranslationalResearch #SystemsBiology #MolecularBiology #PrecisionMedicine

galaxyproject 1d ago

🎓 Teaching bioinformatics next semester?
Galaxy’s Learning Pathways offer ready-to-use project ideas perfect for the classroom or student-led research.

Step-by-step tutorials ✅
Real-world datasets ✅
No installation needed ✅

📚Explore Learning Pathways: https://training.galaxyproject.org/training-material/learning-pathways/

#STEMeducation #Bioinformatics

Learning Pathways

Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.

Galaxy Training Network

Flávia E. Rius 1d ago

Use "export" + the variable name and value when creating a chain of bash scripts, for it to be available in the called script too.

For example:
export LD_CORRELATION=0.2
bash run_ld_correlation_reference.sh
bash run_ld_correlation_samples.sh

#bioinformatics