๐ฅ New Video: Cloud-based Bioimage Analysis at EMBL
How do we handle the massive data volumes in modern microscopy? Yi Sun (Research Software Engineer at EMBL) breaks down the cloud-native workflows used by the Bioimage Analysis Support Team.
๐บ Watch the full webinar: https://www.youtube.com/watch?v=ntwdwCi4Y6k
A great joint effort by @deNBI and @ghga
#Bioinformatics #BioimageAnalysis #EMBL #CloudComputing #OpenScience #Imaging #deNBI #GHGA
๐ฎ๐น Greetings from Rome!
Last week, the HUPO-PSI Spring Meeting at the CNR brought together the global community to advance open data standards for #proteomics and #metabolomics. ๐งฌ
@deNBI was thrilled to be part of the discussions! We organized a successful workshop Metabolomics & MS Data Standards fostering collaboration across the field. ๐ค
Standardization is key to reproducible science! ๐
#HUPOPSI #OpenData #Bioinformatics #deNBI #Metabolomics #MassSpec #FAIRdata #ScienceEvents
๐งฌ Proteomics Workshop in Helsinki! ๐ซ๐ฎ
Join us on April 30th at the University of Helsinki for an intensive day of mass spectrometry analysis. From LC-MS/MS basics to advanced DDA/DIA quantitation using OpenMS and OpenDIAKiosk.
๐ Meilahti Campus, Biomedicum 1, Sali 3
๐ 30th April - 09:00 - 17:00
๐ป Note: This is a hands-on courseโplease bring your laptop!
๐ https://www.denbi.de/training-courses-2026/2086-ms-analysis-with-openms-and-opendiakiosk
#Proteomics #Bioinformatics #MassSpec #OpenMS #Helsinki #UniHelsinki #Science #deNBI
๐งฌ Next @deNBI training course: Nanopore Sequencing 101: ๐งฌ
Join us for a deep dive into ONT technology! ๐
๐
30 June - 2 July 2026
๐ Bielefeld, Germany
๐ป Focus: Linux basics, Library Prep, de.NBI Cloud, Genome Assembly & Metagenomics.
๐ ๏ธ Tools: Dorado, Flye, CheckM, Bakta & more!
Perfect for PhDs & Postdocs. No prior bioinformatics knowledge required ๐ง
Register here: https://www.denbi.de/training-courses-2026/2071-nanopore-sequencing-101-from-library-prep-to-genomics-and-metagenomic-analysis
#Genomics #Bioinformatics #Nanopore #ONT #Bielefeld #deNBI #ScienceTraining #Metagenomics #Linux
Are you passionate about Computational Proteomics and Plant Science? The @tu_muenchen is looking for a Doctoral Candidate (f/m/d) to join their visionary graduate college.
๐ The Project: Build Graph Neural Networks to predict protein-protein interactions in crops.
๐ผ Offer: 4-year position (TV-L E13) starting Oct 2026.
๐
Deadline: 30 May 2026
๐ Location: Freising/Munich, Germany
๐ Apply now: https://www.denbi.de/news1/2077-doctoral-candidate-f-m-d-in-computational-proteomics-bioinformatics
#Bioinformatics #Proteomics #PlantScience #PhDPosition #TUM #deNBI
#nfcore and #VirJenDB plan a hybrid #hackathon on 17 May as a satellite event of #ViBioM2026 toward #opensource #virus #bioinformatics workflows.
Proposed projects
- expand VirJenDB visualizations with an atlas
- work on an existing nf-core virus workflow
- port your tool to bioconda and other #Nextflow prep
๐ Propose your project and indicate your interest: https://forms.gle/KWJYPCXgGotmrhCu8.
๐ Registration opens April 2026! More: https://tinyurl.com/mefewbw4.
Have you already checked out the IWC - the Intergalactic Workflow Commission that provides curated and tested #usegalaxy workflows to you?
119 scientific workflows! And the best is that you can start them from the IWC website at your favourite Galaxy server using free academic resources.
Too much data? ๐งฌ๐ป
@deNBI provides the infrastructure you need to succeed:
โ
Free bioinformatics tools & services
โ
High-quality training for life scientists
โ
Cloud resources for German research
Don't start from scratchโstart with us!
๐ Read the Flyer ๐ --> www.denbi.de/images/Downloads/deNBI_Flyer_What_is_deNBI.pdf
Wrestling with lipidomics data? ๐งฌ
The LIFS Web Portal transforms messy mass-spec results into actionable insights. No installation, just end-to-end workflows:
๐ธ Untargeted ID & QC
๐ธ Interactive stats & viz
๐ธ Standardized nomenclature (Goslin)
Free for academics! ๐
de.NBI & ELIXIR Germany
NFDI4Microbiota
Bjoern Gruening