nf-coreJun 11

Pipeline release! nf-core/pairgenomealign v2.3.0 - nf-core/pairgenomealign v2.3.0 – Umi budou!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.3.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v2.3.0 – Umi budou · nf-core/pairgenomealign

v2.3.0 "Umi budou" - [June 10th 2026] Added New --multi_cram option to produce a multi-query CRAM file combining all the alignments (#60). New --multiqc_thumbs option to produce alignment thumbnai...

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nf-coreMay 23

Pipeline release! nf-core/pairgenomealign v2.2.3 - nf-core/pairgenomealign v2.2.3 – Reitou mikan!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.3

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v2.2.3 – Reitou mikan · nf-core/pairgenomealign

v2.2.3 "Reitou mikan" - [May 20th 2026] Fixed Conforms to nf-core template version 4.0.2 (#107). Improve description of what the pipeline does and how (#108). Dependencies Dependency Old versi...

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nf-coreJan 30

Pipeline release! nf-core/pairgenomealign v2.2.2 - nf-core/pairgenomealign v2.2.2 – Juicy!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.2

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

nf-coreAug 18, 2025

Pipeline release! nf-core/pairgenomealign v2.2.1 - nf-core/pairgenomealign v2.2.1 – C’est quoi ça?!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.1

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

nf-coreJul 10, 2025

Pipeline release! nf-core/pairgenomealign v2.2.0 - nf-core/pairgenomealign v2.2.0 – Chagara ponzu!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v2.2.0 – Chagara ponzu · nf-core/pairgenomealign

v2.2.0 "Chagara ponzu" - [May 29th 2025] Added Support for export to BAM and CRAM formats (#31) (#43). SAM/BAM/CRAM alignments files are sorted and their header features all sequences of the targe...

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nf-coreMay 16, 2025

Pipeline release! nf-core/pairgenomealign v2.1.0 - nf-core/pairgenomealign v2.1.0 – Goya champuru!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.1.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

nf-coreFeb 5, 2025

Pipeline release! nf-core/pairgenomealign v2.0.0 - nf-core/pairgenomealign v2.0.0 – Naga imo!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.0.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v2.0.0 – Naga imo · nf-core/pairgenomealign

v2.0.0 "Naga imo" - [February 5th, 2025] Breaking changes The LAST software was updated and it has new defaults for some of its parameters. The alignments ran with this pipeline will not be identi...

GitHub
nf-coreDec 18, 2024

Pipeline release! nf-core/pairgenomealign v1.1.1 - nf-core/pairgenomealign v1.1.1 – Kani nabe!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.1.1

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v1.1.1 – Kani nabe · nf-core/pairgenomealign

This release brings the pipeline to the standards of Nextflow 24.10.1 and nf-core 3.1.0. No changes were made to the alignment process.

GitHub
nf-coreOct 10, 2024

Pipeline release! nf-core/pairgenomealign v1.1.0 - nf-core/pairgenomealign v1.1.0 – Nattou Maki!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.1.0

#comparative-genomics #dot-plot #genomics #last #pairwise-alignment #synteny #whole-genome-alignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v1.1.0 – Nattou Maki · nf-core/pairgenomealign

Added a new softmask parameter, to optionally keep original softmasking.

GitHub
nf-coreAug 27, 2024

Pipeline release! nf-core/pairgenomealign v1.0.0 - nf-core/pairgenomealign v1.0.0 – Sweet Potato!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.0.0

#comparative-genomics #dot-plot #genomics #last #pairwise-alignment #synteny #whole-genome-alignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v1.0.0 – Sweet Potato · nf-core/pairgenomealign

Initial release. Thanks again to my colleagues, collaborators, and the nf-core community. nf-core/pairgenomealign is a bioinformatics pipeline that aligns one or more query genomes to a target gen...

GitHub