πŸ”πŸ“„ 'Prioritizing repurposable drugs for Alzheimer's disease using network-based analysis with concurrent assessment of Long QT syndrome risk.' - a #DrugRepurposing Research article on #ScienceOpen:

➑️ https://www.scienceopen.com/document?vid=c8f12215-0b3a-413c-bac7-ed5d27981865

#REPO4EU #NetworkMedicine #AlzheimersResearch #QTInterval #Interactome #Bioinformatics

Prioritizing repurposable drugs for Alzheimer’s disease using network-based analysis with concurrent assessment of Long QT syndrome risk

<p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d3176694e169"> <div class="list"> <a class="named-anchor" id="celist0001"> <!-- named anchor --> </a> <ul class="so-custom-list" style="list-style-type: none"> <li id="celistitem0001"> <div class="so-custom-list-label so-ol">β€’</div> <div class="so-custom-list-content so-ol"> <p dir="auto" id="para0001">Identification of repurposable drugs for AD.</p> </div> </li> <li id="celistitem0002"> <div class="so-custom-list-label so-ol">β€’</div> <div class="so-custom-list-content so-ol"> <p dir="auto" id="para0002">Filtering of drugs at risk for LQTS using diffusion- and modularity-based methods.</p> </div> </li> <li id="celistitem0003"> <div class="so-custom-list-label so-ol">β€’</div> <div class="so-custom-list-content so-ol"> <p dir="auto" id="para0003"> <i>In-silico</i>-validation of candidate compounds for AD mitigation through GSEA analysis. </p> </div> </li> <li id="celistitem0004"> <div class="so-custom-list-label so-ol">β€’</div> <div class="so-custom-list-content so-ol"> <p dir="auto" id="para0004">Promising compounds include acamprosate, tolcapone, sitagliptin, and diazoxide.</p> </div> </li> </ul> </div> </p><p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="first" dir="auto" id="d3176694e194">Alzheimer's disease affects 6.9 million Americans aged 65 and older, a number expected to double by 2060. Eight FDA-approved drugs target Alzheimer's, but no cure is available, and most treatments are symptomatic. Drug repurposing, the use of FDA-approved drugs for new indications, is a promising strategy to address this lack of effective therapies. However, despite prior safety approval, repurposable drugs may still trigger unexpected side-effects in new contexts. This study introduces a network-based approach to minimize side-effect risk in drug repositioning, focusing on QT interval prolongation, a cardiac side-effect observed in Alzheimer's patients treated with acetylcholinesterase inhibitors. The method integrates Mode-of-Action and Random Walk with Restart analyses to identify repositioning candidates while assessing QT-related risk. This strategy identified promising compounds including acamprosate, tolcapone, sitagliptin, and diazoxide, with potential to mitigate disease pathology. Gene set enrichment analysis was used to computationally assess the compounds' ability to reverse disease-related gene expression signatures. </p><p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d3176694e199"> <div class="fig panel" id="fig0005"> <a class="named-anchor" id="fig0005"> <!-- named anchor --> </a> <div class="figure-container so-text-align-c"> <img alt="" class="figure" src="/document_file/bf57ab42-eed2-4b4e-b64d-482ee8ce1ce1/PubMedCentral/image/ga1"/> </div> <div class="panel-content"/> </div> </p>

ScienceOpen

Global genetic interaction map of human cell reveals conserved principles of genetic networks
https://www.biorxiv.org/content/10.1101/2025.06.30.662193v1?rss=1

#interactome #MolecularGenetics #genetics #FunctionalGenetics

Genetic study sheds light on changes that shaped human brain evolution

A new Yale study provides a fuller picture of the genetic changes that shaped the evolution of the human brain, and how the process differed from the evolution of chimpanzees.

Phys.org

Human molecular map contributes to understanding of disease mechanisms
https://www.sciencedaily.com/releases/2024/09/240911175947.htm

Roadmap to molecular human linking multiomics w. population traits, diabetes subtype
https://www.nature.com/articles/s41467-024-51134-x

6,304 quantitative molec. traits
1,221,345 genetic variants
methylation @ 470,837 DNA CpG sites
gene expression: 57,000 transcripts

#metabolome #connectome #interactome #genotype #phenotype #IndividualVariation #transcriptome #multiomics #omics #disease #MolecularEpidemiology #GeneExpression

Human 'molecular map' contributes to the understanding of disease mechanisms

Scientists have created an intricate molecular map of the human body and its complex physiological processes based on the analysis of thousands of molecules in blood, urine and saliva samples from 391 volunteers. The data was integrated to create a powerful, interactive visual web-based tool called Connecting Omics (COmics) that can be used to investigate the complex molecular make-up of humans and discover underlying traits associated with various diseases.

ScienceDaily

AlphaProteo generates novel proteins for biology and health research
https://deepmind.google/discover/blog/alphaproteo-generates-novel-proteins-for-biology-and-health-research
https://news.ycombinator.com/item?id=41457331

* Google DeepMind
* AI system designs proteins that successfully bind to target molecules
* potential for advancing drug design, disease understanding

#ComputationalBiology #ProteinFolding #AlphaFold #AlphaProteo #SyntheticBiology #ProteinProteinInteractions #ProteinDrugInteractins #PDI #interactome #DeepMind #AI

AlphaProteo generates novel proteins for biology and health research

New AI system designs proteins that successfully bind to target molecules, with potential for advancing drug design, disease understanding and more.

Google DeepMind
Research dives into the social network of proteins

Stanley Milgram's groundbreaking "Six Degrees of Separation" experiment demonstrated the surprisingly close connections among humans back in the 1960s. Now the research team led by Professor Matthias Mann at the Max Planck Institute (MPI) of Biochemistry has shown that the proteins in our cells are equally well connected.

A new proteomic workflow establishing interdependencies between protein #phosphorylation & complex formation is applied to the signal integrator & Hippo pathway effector YAP1 ➑️ http://bit.ly/3mJ4W0t
Matthias Gstaiger @eth_en
#proteomics #interactome #ProteinProteinInteractions #CellSignaling
Fishing for protein partners nets clues to autism | Spectrum | Autism Research News

Connections between 13 autism-linked proteins and their binding partners in excitatory neurons implicate a new molecular pathway.

Spectrum | Autism Research News

Just started my journey at #mastodon.

I'm a lecturer and group leader at the SIB and the University of Applied Sciences and Arts Northwestern Switzerland teaching Data Science in Life Sciences.

I have a background in #Bioinformatics; Worked in #StructuralBiology, #Proteomics, #Interactome, #NGS, #Cancer, #Diagnostics and have a special interest in #alternativeSplicing, #molecularModelling and #clinicalDataScience.

Looking forward to read and share the latest #scienceNews

Protein atlas doubles number of known interactions in mice | Spectrum | Autism Research News

Thousands of protein-protein interactions mapped in mice reveal how these networks shift across seven kinds of tissue.

Spectrum | Autism Research News