nf-coreFeb 16

Pipeline release! nf-core/taxprofiler v1.2.6 - v1.2.6 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.6

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release v1.2.6 - Bouncy Basenji Patch · nf-core/taxprofiler

Added #678 Included metaval.config to generat input files for genomic-medicine-sweden/metaval (added by @LilyAnderssonLee) #655 Added nf-tests for test profile (added by @sofstam) Fixed #674 Fix...

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nf-coreJan 23

Pipeline release! nf-core/ampliseq v2.16.1 - Ampliseq release 2.16.1 2026-01-23!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.1

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq release 2.16.1 2026-01-23 · nf-core/ampliseq

Two bug fixes plus modifications to adhere to Nextflow strict syntax. Fixed #943 - Fix SciLifeLab Figshare urls for reference databases. #942 - Nextflow strict syntax for non-nf-core-modules/workf...

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nf-coreJan 16

Pipeline release! nf-core/ampliseq v2.16.0 - Ampliseq Version 2.16.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

nf-coreNov 21

Pipeline release! nf-core/taxprofiler v1.2.5 - v1.2.5 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.5

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release v1.2.5 - Bouncy Basenji Patch · nf-core/taxprofiler

Added #640 Added support for saving Metaphlan SAM files (❤️ to @mr2raccoon for reporting and added by @jfy133) #657, #667 Template update for nf-core/tools v3.4.1 and v3.5.1 (added by @sofstam and...

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nf-coreOct 6

Pipeline release! nf-core/ampliseq v2.15.0 - Ampliseq Version 2.15.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.15.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.15.0 · nf-core/ampliseq

nf-core/ampliseq version 2.15.0 - 2025-10-06 Summary of changes Many issues were fixed and more control was given over QC and taxonomic classification. Detailed changes Added #909,#914 - Parameter...

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nf-coreAug 28, 2025

Pipeline release! nf-core/taxprofiler v1.2.4 - v1.2.4 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.4

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release v1.2.4 - Bouncy Basenji Patch · nf-core/taxprofiler

Added #619 Added default pipeline nf-test (added by @sofstam) #615 Updated to nf-core pipeline template v3.3.1 (added by @sofstam) #614 Updated module krakenuniq/preloadedkrakenuniq to fix preload...

GitHub
nf-coreAug 7, 2025

Pipeline release! nf-core/detaxizer v1.2.0 - detaxizer 1.2.0 - Kunschd!

Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.2.0

#deidentification #decontamination #edna #fastq #filter #longreads #metabarcoding #metagenomics #microbiome #nanopore #shortreads #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release detaxizer 1.2.0 - Kunschd · nf-core/detaxizer

Summary of changes filtering is set now by default defaults reflect best settings from benchmarking human decontamination improvements to memory and time requirements Detailed changes Added PR #...

GitHub
nf-coreMay 23, 2025

Pipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.14.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.14.0 · nf-core/ampliseq

nf-core/ampliseq version 2.14.0 - 2025-05-23 Summary of changes Multi-region analysis is now easier with custom databases, parameters were changed or added Updated sbdi-gtdb, gtdb, PR2 databases a...

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nf-coreApr 4, 2025

Pipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.13.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.13.0 · nf-core/ampliseq

nf-core/ampliseq version 2.13.0 - 2025-04-04 Summary of changes Zenodo changed from zenodo.org/record to zenodo.org/records and some taxonomic databases could not be downloaded any more Add most r...

GitHub
nf-coreMar 13, 2025

Pipeline release! nf-core/taxprofiler v1.2.3 - v1.2.3 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.3

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release v1.2.3 - Bouncy Basenji Patch · nf-core/taxprofiler

Added #576 Sort input to krakenuniq to enable retrieval of cached batch tasks (❤️ to @muniheart for reporting and fix) #569 Updated to nf-core pipeline template v3.1.2 (added by @sofstam) #571 Upd...

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