Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1
#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
So, I noticed something about #Trump’s trip to #China, because I tend to pay attention to #bioethics stuff. Amongst all the panopticon bros was a solitary biotech executive; Jacob #Thaysen, CEO of #Illumina.
Illumina holds the patents that mean 80% of the world’s #genomic analysis is done via their products or databases.
According to #CIA agents, the #US left the #WHO so we didn’t have to admit that we’d funded the Chinese lab where #COVID seems to have originated.
Leaving the WHO also means Illumina no longer has to share their data with public health experts. And they’ve been first on the ground in both #hantavirus and #Ebola to sequence these outbreaks. #African countries must sign away their #genome rights before America will pay the health budget Congress authorized. So, that’s fun.
And once again, as I start digging, the #DreyDossier brings receipts. She’s a hella investigator.
https://primateai3d.basespace.illumina.com/
PrimateAI scores measures the pathogenicity of protein coding missense variants. When the score is close to one, it means the variant is highly likely deleterious; whereas when it is close to 0, it is generally considered benign. It is recommended to use PrimateAI score cutoff of 0.8 to distinguish benign variants from deleterious variants.
PrimateAI-3D algorithm is a semi-supervised 3D-convolutional neural network for variant pathogenicity prediction, trained on 4.5 million common missense variants with likely benign consequence and precise protein 3D structures. It also leveraged language models of protein sequences and variational autoencoder on multiple sequence alignments.
Pipeline release! nf-core/demultiplex v1.7.1 - 1.7.1!
Demultiplexing pipeline for sequencing data
Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.7.1
#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0
#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
Today: Illumina, parte da Cologno la rigenerazione urbana all’insegna dello sport per tutti
Lo sport come diritto universale, parte da questo concetto il progetto di Sport e Salute che ridisegna gli spazi abbandonati e degradati nelle città d’Italia. Ogni luogo sarà pensato e ideato con la cittadinanza e realizzato con materiali premium : campi da basket 3x3 ispirati al Madison Square...
Illumina, starting from Cologno, is regenerating the city through sport for everyone.
Sport as a universal right, this is the concept behind the Sport e Salute project, which redesigns abandoned and degraded spaces in Italian cities. Every location will be conceived and realized with the involvement of the citizenry and using premium materials: 3x3 basketball courts inspired by Madison Square…
#Illumina #Cologno #theSporteSalute #Italian #MadisonSquare
https://www.today.it/speciale/progetto-sport-rigenerazione-urbana.html
nf-core
Albert Vilella, PhD.
MissConstrue
Pierre Lindenbaum
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