nf-coreJan 23

Pipeline release! nf-core/ampliseq v2.16.1 - Ampliseq release 2.16.1 2026-01-23!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.1

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq release 2.16.1 2026-01-23 · nf-core/ampliseq

Two bug fixes plus modifications to adhere to Nextflow strict syntax. Fixed #943 - Fix SciLifeLab Figshare urls for reference databases. #942 - Nextflow strict syntax for non-nf-core-modules/workf...

GitHub
nf-coreJan 16

Pipeline release! nf-core/ampliseq v2.16.0 - Ampliseq Version 2.16.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

de.NBI & ELIXIR GermanyNov 18
🧬 Join our SILVA Workshop!
📅 11 Dec 2025, 15:00–17:00 CET | 🌐 Online
✅ Learn about SILVA release 144, new website, added classifiers, & DOIs for datasets.
🔎 Find QIIME2, KRAKEN2, & DADA2 classifiers, website tips & citation info.
👩‍🎓 Beginner-friendly!
✉️ Register: [email protected]
#SILVA #rRNA #QIIME2 #Bioinformatics
nf-coreOct 6

Pipeline release! nf-core/ampliseq v2.15.0 - Ampliseq Version 2.15.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.15.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.15.0 · nf-core/ampliseq

nf-core/ampliseq version 2.15.0 - 2025-10-06 Summary of changes Many issues were fixed and more control was given over QC and taxonomic classification. Detailed changes Added #909,#914 - Parameter...

GitHub
nf-coreMay 23, 2025

Pipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.14.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.14.0 · nf-core/ampliseq

nf-core/ampliseq version 2.14.0 - 2025-05-23 Summary of changes Multi-region analysis is now easier with custom databases, parameters were changed or added Updated sbdi-gtdb, gtdb, PR2 databases a...

GitHub
nf-coreApr 4, 2025

Pipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.13.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.13.0 · nf-core/ampliseq

nf-core/ampliseq version 2.13.0 - 2025-04-04 Summary of changes Zenodo changed from zenodo.org/record to zenodo.org/records and some taxonomic databases could not be downloaded any more Add most r...

GitHub
nf-coreNov 15, 2024

Pipeline release! nf-core/ampliseq v2.12.0 - Ampliseq Version 2.12.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.12.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.12.0 · nf-core/ampliseq

nf-core/ampliseq version 2.12.0 - 2024-11-15 Summary of changes updated some reference databases several bug fixes updated to nf-core template 3.0.2 dependency updates Detailed changes Added #78...

GitHub
nf-coreAug 5, 2024

Pipeline release! nf-core/ampliseq v2.11.0 - Ampliseq Version 2.11.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.11.0

#16s #18s #amplicon-sequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomic-classification #taxonomic-profiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.11.0 · nf-core/ampliseq

nf-core/ampliseq version 2.11.0 - 2024-08-06 Summary of changes This update is mostly about reference taxonomy databases: added reference databases sbdi-gtdb=R09-RS220-1 for DADA2 added reference ...

GitHub
nf-coreJun 27, 2024

Pipeline release! nf-core/ampliseq v2.10.0 - Ampliseq Version 2.10.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.10.0

#16s #18s #amplicon-sequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomic-classification #taxonomic-profiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.10.0 · nf-core/ampliseq

nf-core/ampliseq version 2.10.0 - 2024-06-27 Summary of changes added ANCOM-BC for differential abundance analysis updated reference databases for sbdi-gtdb & gtdb with R08-RS214-1 and R09-RS220, ...

GitHub
nf-coreApr 3, 2024

Pipeline release! nf-core/ampliseq v2.9.0 - Ampliseq Version 2.9.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.9.0

#16s #18s #amplicon-sequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomic-classification #taxonomic-profiling #nfcore #openscience #nextflow #bioinformatics

Release Ampliseq Version 2.9.0 · nf-core/ampliseq

nf-core/ampliseq version 2.9.0 - 2024-04-03 Summary of changes added multiple regions analysis (including 5R / SMURF / q2-sidle), integrating pipesidle and its software container with 1 & 2. templ...

GitHub