Pipeline release! nf-core/funcscan v4.0.0 - v4.0.0 - Chinese Baozi - 2026-06-27!
(Meta-)genome screening for functional and natural product gene sequences
Please see the changelog: https://github.com/nf-core/funcscan/releases/tag/4.0.0

#amp #amr #antibioticresistance #antimicrobialpeptides #antimicrobialresistancegenes #arg #assembly #bgc #biosyntheticgeneclusters #contigs #function #metagenomics #naturalproducts #screening #secondarymetabolites #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0

#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/longraredisease v1.0.0 - 1.0.0!
Long read sequencing pipeline to identify variants in patients with neurodevelopmental disorders
Please see the changelog: https://github.com/nf-core/longraredisease/releases/tag/1.0.0

#nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v3.0.0 - nf-core/pairgenomealign v3.0.0 – Tokoroten!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/3.0.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/metatdenovo v1.4.0 - Download improvements and more!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.0

#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pacvar v1.1.0 - Neon tetra!
Longread PacBio sequencing processing for WGS and PureTarget
Please see the changelog: https://github.com/nf-core/pacvar/releases/tag/1.1.0

#alignment #longread #pacbio #puretarget #variantcalling #wgs #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/raredisease v3.1.1 - 3.1.1 - Princess Peach (patch)!
Call and score variants from WGS/WES of rare disease patients.
Please see the changelog: https://github.com/nf-core/raredisease/releases/tag/3.1.1

#diagnostics #raredisease #snv #structuralvariants #variantannotation #variantcalling #wes #wgs #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/demo v1.2.0 - nf-core/demo 1.2.0 - Sleeping Kiwi!
nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
Please see the changelog: https://github.com/nf-core/demo/releases/tag/1.2.0

#demo #minimalexample #training #tutorial #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/fastquorum v2.0.0 - 2.0.0!
Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
Please see the changelog: https://github.com/nf-core/fastquorum/releases/tag/2.0.0

#consensus #umi #umis #uniquemolecularidentifier #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/differentialabundance v2.0.0 - v2.0.0 - 2026-06-23!
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Please see the changelog: https://github.com/nf-core/differentialabundance/releases/tag/2.0.0

#atacseq #chipseq #deseq2 #differentialabundance #differentialexpression #gsea #limma #microarray #rnaseq #shiny #nfcore #openscience #nextflow #bioinformatics