Montevideo, 2011. Una cepa de K. pneumoniae aislada durante un brote: blaKPC-2, resistente a colistina. ¿Cómo sabés si otra cepa del mismo hospital es el mismo clon o un evento independiente?
El análisis filogenético las ubicó en dos clados distintos de ST258 con perfiles de resistencia completamente diferentes. Sin genómica, parecen el mismo problema.
En Equaiar hacemos este análisis para hospitales. Reporte en 48-72hs.
doi.org/10.1016/j.jgar.2018.09.001
Pipeline release! nf-core/raredisease v3.0.0 - 3.0.0 - Mario!
Call and score variants from WGS/WES of rare disease patients.
Please see the changelog: https://github.com/nf-core/raredisease/releases/tag/3.0.0
#diagnostics #raredisease #snv #structuralvariants #variantannotation #variantcalling #wes #wgs #nfcore #openscience #nextflow #bioinformatics
> Texas A&M eliminates women’s and gender studies degree program https://19thnews.org/2026/01/texas-am-eliminates-womens-gender-studies-academic-program/
TX continues working on reducing and driving their #HigherEd to the bottom.
#academia #WGS #gender #women #LGBTQ #TexasFriendly #BoycottTexas
Pipeline release! nf-core/oncoanalyser v2.3.0 - 2.3.0 - Spotted Nightjar!
A comprehensive cancer DNA/RNA analysis and reporting pipeline
Please see the changelog: https://github.com/nf-core/oncoanalyser/releases/tag/2.3.0
#cancer #clinical #dna #exome #ngs #panel #rna #targeted #wgs #wigits #wts #nfcore #openscience #nextflow #bioinformatics
Het Nederland van rechts: China aan de Noordzee. Iedere burger is verdacht totdat ie zélf het tegendeel kan bewijzen.
"Wet gegevensverwerking samenwerkingsverbanden (WGS) biedt grote reden tot zorgen"
-> "Er worden steeds meer methodes ontwikkeld om gebruik te maken van deze data. In plaats van deze in te zetten vóór de burger, lijken overheidsinstanties meer geïnteresseerd in hoe ze deze data kunnen gebruiken tégen de burger."
(Via @bitsoffreedom ) #privacy #WGS
https://www.bitsoffreedom.nl/2025/11/19/wet-wgs-biedt-grote-reden-tot-zorgen/
Adaptive sampling #WGS is moving genomics from lab bench to bedside. In our latest work, we deliver variant, structural & methylation insights on @nanopore's PromethION platform with molecular signals emerging in minutes, not days. Watch this space 👀
#clinicalai #genomicsforhealth #nanopore #multiomics
https://www.medrxiv.org/content/10.1101/2025.10.02.25336569v1
Meanwhile, in more #GOP #PartyOfStupid #fuckery, #KentuckyProud edition.
> Kentucky Republican lawmaker questions gender and women’s studies course at UK https://kentuckylantern.com/2025/07/15/kentucky-republican-lawmaker-questions-gender-and-womens-studies-course-at-uk/
Equaiar
nf-core
Sharvari Narendra
A. Rivera
Hans 🙋♂️
Veranderwens
Martin Smith