nf-coreMay 5

Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0

#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Boas PuckerDec 10

Just wrapped up the “Plant Genome Sequence Assembly and Annotation” course 🌱
Participants dove deep into: processing long-read data, building a genome sequence from scratch, checking assembly quality, and predicting genes. Thanks to everyone who joined and contributed — excited to watch your future discoveries!

https://www.izmb.uni-bonn.de/en/pbb/news#d2025c1

#Genomics #PlantScience #Bioinformatics #GenomeAssembly

@PuckerLab @samnm

galaxyprojectOct 21, 2025

My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy.
https://galaxyproject.org/news/2025-07-22-ming-li-internship/

@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #Bioinformatics #Genomics #GenomeAssembly #GenomeAnnotation #TrainingProgram #Internship #Journey #internship #OpenScience #ComputationalBiology #DataScience #ResearchExperience #NextGenScientists

Exploring Genomics with Galaxy: A Six-Week Internship Journey

My internship experience with assembling genomes and annotating them during a 6 week internship

Galaxy-Team der Uni FreiburgOct 21, 2025

My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy.
https://galaxyproject.org/news/2025-07-22-ming-li-internship/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #Bioinformatics #Genomics #GenomeAssembly #GenomeAnnotation #TrainingProgram #Internship #Journey #internship #OpenScience #ComputationalBiology #DataScience #ResearchExperience #NextGenScientists

Exploring Genomics with Galaxy: A Six-Week Internship Journey

My internship experience with assembling genomes and annotating them during a 6 week internship

nf-coreOct 17, 2025

Pipeline release! nf-core/bacass v2.5.0 - nf-core/bacass v2.5.0!

Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.5.0

#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

nf-coreJul 21, 2025

Pipeline release! nf-core/genomeassembler v1.1.0 - 1.1.0 - Aluminium Pigeon 'Brass Pigeon'!

Please see the changelog: https://github.com/nf-core/genomeassembler/releases/tag/1.1.0

#genomeassembly #nfcore #openscience #nextflow #bioinformatics

Release 1.1.0 - Aluminium Pigeon 'Brass Pigeon' · nf-core/genomeassembler

Some bugfixes, version and template updates, and internal pipeline refactoring, see changelog for more information. Full Changelog: 1.0.1...1.1.0

GitHub
Melbourne BioinformaticsMay 2, 2025
Melbourne Bioinformatics is hosting a FREE workshop on Hybrid de novo genome assembly using Galaxy. Save the date: Thursday, 5 June 2025, 1:00 PM - 4:00 PM AEST at 21 Bedford Street North Melbourne, VIC 3051. #GenomeAssembly #Bioinformatics
https://www.eventbrite.com.au/e/hybrid-de-novo-genome-assembly-nanopore-and-illumina-using-galaxy-tickets-1232439251979?aff=oddtdtcreator
Hybrid de novo genome assembly - Nanopore and Illumina using Galaxy

Learn how to create high-quality genome assemblies using the powerful combination of Nanopore and Illumina reads.

Eventbrite
LeszekMar 24, 2025
Super cool paper (part of PhD thesis): I thought assembling the genome from raw signal isn't practical, but it seems not possible, but yielding results comparable/better to usual approaches: basecalling followed by de novo genome assembly!
#nanopore #GenomeAssembly
https://arxiv.org/pdf/2410.17801
https://arxiv.org/html/2503.02997v1#Ch7
nf-coreMar 19, 2025

Pipeline release! nf-core/genomeassembler v1.0.1 - 1.0.1 - Aluminium Pigeon!

Please see the changelog: https://github.com/nf-core/genomeassembler/releases/tag/1.0.1

#genomeassembly #nfcore #openscience #nextflow #bioinformatics

Release 1.0.1 - Aluminium Pigeon · nf-core/genomeassembler

Bugfix release addressing bugs discovered after release of 1.0.0 What's Changed use correct genome-size for flye and longstitch by @nschan in #125 Jellyfish singularity container by @nschan in #12...

GitHub
nf-coreNov 18, 2024

Pipeline release! nf-core/bacass v2.4.0 - v2.4.0!

Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.4.0

#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Release nf-core/bacass v2.4.0 · nf-core/bacass

v2.4.0 nf-core/bacass: "Yellow Copper Crayfish" 2024/11/05 Changed #180 Bump version 2.4.0. #169 Refactored long-reads polishing step. #167 Remove params.save_merged as merged reads are not used i...

GitHub