Mastodawn

Pipeline release! nf-core/proteinfamilies v2.3.0 - Iron Wolf!
Generation and updating of protein families
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.3.0

#metagenomics #proteinfamilies #nfcore #openscience #nextflow #bioinformatics

nf-core Dec 19

Pipeline release! nf-core/proteinfamilies v2.2.0 - Mercury Spider!
Generation and updating of protein families
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.2.0

#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics

nf-core Nov 25

Pipeline release! nf-core/proteinfamilies v2.1.0 - Iron Goat!
Generation and updating of protein families
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.1.0

#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics

Release Iron Goat · nf-core/proteinfamilies

Added #133 - Using the new workflow output syntax to publish the downstream nf-core/proteinfold samplesheet. (by @vagkaratzas) #132 - Added optimized memory and time resources for test and test_fu...

GitHub

nf-core Sep 23, 2025

Pipeline release! nf-core/proteinfamilies v1.3.1 - Gold Panda!

Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.3.1

#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics

Release Gold Panda · nf-core/proteinfamilies

Fixed #112 - Fixed a bug in EXTRACT_FAMILY_REPS, where all sequences were pasted into the family representative one, and updated the relevant local nf-test. (by @vagkaratzas) Changed #106 - Swap...

GitHub

nf-core Aug 6, 2025

Pipeline release! nf-core/proteinfamilies v1.3.0 - Nickel Spider!

Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.3.0

#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics

nf-core Jun 16, 2025

Pipeline release! nf-core/proteinfamilies v1.2.0 - Aluminium Frog!

Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.2.0

#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics

Release Aluminium Frog · nf-core/proteinfamilies

Added #93 Added nf-test and meta.yml file for local subworkflow GENERATE_FAMILIES. Added nf-test and meta.yml file for local subworkflow REMOVE_REDUNDANCY. Added nf-test and meta.yml file for loc...

GitHub

nf-core May 20, 2025

Pipeline release! nf-core/proteinfamilies v1.1.1 - Lead Sparrow!

Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.1.1

#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics

Release Lead Sparrow · nf-core/proteinfamilies

Changed #77 - Default branch changed from master to main. #73 - Changed the fasta parsing library of the CHUNK_CLUSTERS local module, from pyfastx back to the latest version of biopython, and para...

GitHub

Planetary Ecologist May 12, 2025

Pertussis toxin (Microbiology 🦠)

Pertussis toxin is a protein-based AB5-type exotoxin produced by the bacterium Bordetella pertussis, which causes whooping cough. PT is involved in the colonization of the respiratory tract and the establishment of infection. Research suggests PT may have a therapeutic role in treating a number of common human ailments, ...

https://en.wikipedia.org/wiki/Pertussis_toxin

#PertussisToxin #Ab5Toxins #Microbiology #WhoopingCough #ProteinFamilies #InvertebrateToxins

Pertussis toxin - Wikipedia

nf-core May 9, 2025

Pipeline release! nf-core/proteinfamilies v1.1.0 - Nickel Elephant!

Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.1.0

#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics

Release Nickel Elephant · nf-core/proteinfamilies

Added #69 - Added the hhsuite/reformat nf-core module to reformat .sto alignments to .fas when in-family sequence redundancy is not removed. Also added the option to save intermediate and final fa...

GitHub

nf-core Feb 17, 2025

Pipeline release! nf-core/proteinfamilies v1.0.0 - Iron Rhinoceros!

Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/1.0.0

#metagenomics #proteinfamilies #proteomics #nfcore #openscience #nextflow #bioinformatics

Release Iron Rhinoceros · nf-core/proteinfamilies

Initial release of nf-core/proteinfamilies, created with the nf-core template. Added Amino acid sequence clustering (mmseqs) Multiple sequence alignment (famsa, mafft, clipkit) Hidden Markov Model...

GitHub