Second half of the "variation and information" session #CSSingleCells23
led off by Sam Morris of WashU
http://morrislab.wustl.edu/

Multi-omic lineage tracing: insights into reprogramming cell identity

her piece in *Development*, "The evolving concept of cell identity in the single cell era"

working on "induced hepatocytes", start with fibroblasts, via "induced endoderm progenitors"

new work on #adipocytes
https://www.biorxiv.org/content/10.1101/2023.06.01.543318v1

#reprogramming
#StemCells
#CellIdentity
#CellFate

1/2

Samantha Morris Lab

The Morris Lab is a stem cell and developmental biology laboratory based in the Departments of Genetics, and Developmental Biology at Washington University in St. Louis, USA. Our research focuses on dissecting the gene regulatory networks that define cell fate. We apply this knowledge to engineer clinically relevant cell types.

Yogesh Goyal at Northwestern Feinberg
https://www.goyallab.org/

Topic:
Tracing rare cell plasticity and diverse fate decisions in single cancer cells

Begins with reference to (and pic of) Monod's *Chance and Necessity*
#CellFate
#SingleCell
#CSSingleCells23

Emphasizing non-genetic differences between cells, something we can only see at single-cell resolution

Refers to Luria & Delbruck 1943 about bacterial resistance (to phage), relevant to cancer resistance to therapy (selected)

1/2

Goyal Lab

Goyal Lab

A healing #wound is a microcosm of many cell states found during #organogenesis. In addition to dead and dying cells, one may find proliferating cells, migrating cells, and cells that are differentiating or switching fate. How is this multitude of cell states, often mutually exclusive, established and maintained for successful repair and #regeneration?

--from Primer by Tin Tin Su in @PLOSBiology

#developmentalbiology
#differentiation
#cellfate

https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3002155

How to initiate tissue regeneration by generating mutually exclusive cell states

A healing wound is made of cells that paused proliferation and secrete mitogenic factors and cells that proliferate to replace those lost to cell death. A new study in PLOS Biology describes how 2 conserved signaling pathways could repress each other to create these mutually exclusive cell states.

Unveiling the RNA-guided mechanisms driving cell fate

The early stages of embryonic development contain many of life's mysteries. Unlocking these mysteries can help us better understand early development and birth defects, and help develop new regenerative medicine treatments.

Phys.org
Sequential events during the quiescence to proliferation transition establish patterns of follicle cell differentiation in the Drosophila ovary

Summary: Epithelial follicle stem cells in the fly ovary depend on dynamic, axon-like cytoplasmic projections to re-establish cell fate patterning after a period of nutrient restriction.

The Company of Biologists

Excited to share our latest paper on "Interface Surveillance", a tissue intrinsic defense system against aberrant cells.

https://elifesciences.org/articles/80809

#drosophila #epithelia #tumor #mutations #cellfate #cellcompetition #SFB850

@unifreiburg

Bilateral JNK activation is a hallmark of interface surveillance and promotes elimination of aberrant cells

eLife

In EMBO Journal issue 3:

Host #mucins negotiate peace with #toxigenic #Vibrio
Cytosolic #stressgranules relieve nuclear #ubiquitin-#proteasome system
#Smoothened #cholesterylation and ER exit links in #Hedgehog signaling
Developmental #cellfate decision control by #chromatin reader #TRIM33
Cover by Kimon Lemonides, Helen Walden et al

https://www.embopress.org/toc/14602075/2023/42/3

How does #chromatin reader #TRIM33 control #developmental #cellfate decisions?

Qiaoran Xi Lab at Tsinghua University finds that its embryonic #stemcell-specific recruitment into #PML #nuclearbodies regulates #Lefty1/2 expression upon #Nodal signaling

https://www.embopress.org/doi/10.15252/embj.2022112058

In single pancreatic cells responding to oxidative stress, JNK dynamics regulate an early trigger of cell death, #p53 controls late maintenance of cell cycle arrest &p38 controls a switch between JNK- and p53-dependent cell fate➡️ http://bit.ly/3UPf6YM E Batchelor (UMN Medical School) #QBio #cellfate #SystemsBiology
Single-cell imaging during #adipocyte differentiation reveals a control principle whereby #progenitor cells induced to differentiate can reach the desired distinct differentiated #CellFate despite the many alternative fates en route @TeruelLab #PLOSBiology https://plos.io/3Y38VTu
Early enforcement of cell identity by a functional component of the terminally differentiated state

How can progenitor cells attain a distinct differentiated cell identity, given the fluctuating signaling environment and redundancy of critical transcription factors? This study identifies a control principle whereby progenitor cells induced to differentiate can reach the desired distinct differentiated cell fate despite the possibility of many alternative fates en route.