✍️ New Bioconductor blog post on the SpatialData hackathon and workshop held in November in Switzerland, organized by scverse with Bioconductor participation. Check it out here: https://buff.ly/4fM1qrH

Thanks, Artür Manukyan!

#Bioconductor #SpatialData #scverse #Hackathon #Bioinformatics #DataScience #OpenScience #RStats #Python

Pipeline release! nf-core/scdownstream vv0.0.1 - v0.0.1!

Please see the changelog: https://github.com/nf-core/scdownstream/releases/tag/v0.0.1

#clustering #dimensionality-reduction #integration #quality-control #scverse #single-cell #nfcore #openscience #nextflow #bioinformatics

I’ve been spending a lot of time the past couple weeks digging into the #scverse part of the Python ecosystem (*omics, basically) and most of it is still a mystery to me but I’m loving it so far.

The developers clearly got together and set down some basic rules and guidelines for other packages to be able to “play nice” with the core set and boy does it show.

I’m still working my way through the #scanpy and #squidpy tutorials but major props to these teams 👏