Does anyone know if the code for generating all of the underlying bits for #recount3 (genome indices, exons, genes, etc) for a different genome organism (i.e. zebrafish) is available publicly?
I know of the monorail-external repo that helps someone running their own human or mouse samples in the same workflow, but I've got data from zebrafish that I'd love to run similarly.
#Bioinformatics #Bioconductor #RStats
Maybe @benlangmead (or another) knows of something I missed?
📢 Deadline Extended: EuroBioC2026 Call for Abstracts
Great news! The submission deadline for EuroBioC2026 has been extended to February 13, 2026, to allow more time for submissions.
We welcome submissions for:
💡 Short talks (10 minutes + Q&A)
💡 Posters (A0 portrait)
💡 Workshops (1.5-hour hands-on sessions)
👉 Submit your abstract here: https://openreview.net/group?id=bioconductor.org/EuroBioC/2026/Conference#tab-recent-activity
🎨 Reminder: Only a few days left to submit your sticker design! 🎨
The EuroBioC2026 sticker design contest is still open, but the deadline is fast approaching. This is your chance to design the official sticker for the European Bioconductor Conference, happening in June 2026 in Turku, Finland.
🗓 Deadline: January 31st, 2026
👉 Submit your design here: https://docs.google.com/forms/d/e/1FAIpQLSe6RZlyUspUBZAYKzjX_ctHg3HO-3I1D2y5YTGOTwj8-z6R_Q/viewform
🔗 Learn more: https://eurobioc2026.bioconductor.org/
⏰ Reminder: Pre-conference Workshop Proposals for EuroBioC2026
EuroBioC2026 will host on-site pre-conference workshops on June 1–2, 2026, in Turku, Finland, ahead of the main conference.
If you’re interested in hosting a workshop, please submit your interest here: https://docs.google.com/forms/d/e/1FAIpQLScYOBMs0JsmoZY21mCSnWSBObm-OX7NtZi6NEjY9zNdhsqL5w/viewform
🗓 Deadline: 30 January 2026
Selections will be based on relevance and alignment with the workshop and conference themes.
In this lab, we try to cite our software tools. Hopefully they won't get removed by the primary author. But at least they are there to start.
Each comment here is a citation (I don't have Endnote, and I'm not sure how they are managing the citations, so it seemed easier to add them all as comments). There are more on the next page, but I figured this page was illustrative of what we should strive for as #academics citing our tools.
🚀 EuroBioC2026 – Call for Abstracts is Now Open!
We invite submissions for short talks, posters, and workshops for EuroBioC2026.
🗓️ Important Dates
• 30 January 2026: Call closes
👉 Submit your abstract here: https://openreview.net/group?id=bioconductor.org/EuroBioC/2026/Conference
⚠️ Note: The OpenReview submission system requires all submitters to create an account at least two weeks before the abstract deadline. Please register early to avoid issues
For any questions, contact eurobioc@bioconductor.org
🚨 Last chance to register!
Registration for BioCAsia closes this Friday, 21 November, at 5 PM (Australia time) and this is your final opportunity to secure your spot.
BioCAsia will run in parallel with the ABACBS 2025 Workshops at Flinders University, Adelaide, on Thu 27 & Fri 28 November 2025. With both events hosted in the same venue, you can move seamlessly between sessions for a rich mix of topics and hands-on learning.
👉 Register now: https://www.abacbs.org/abacbs-2025-workshops
We’re live at GBioS, University of Abomey-Calavi in Benin! 5 days of learning, coding & collaboration began yesterday at #BiocInBenin.
C’est parti! Une semaine d’apprentissage et de collaboration a commencé à GBioS hier.
📣 Calling all Bioconductor users and developers! 🧬 ✨
We’re launching a new online quarterly seminar series showcasing contributor innovations and sparking conversations about how packages work together. Expect 30 minutes of insight, 15 minutes of guided discussion, and 15 minutes of open Q&A.
📅 Date: Dec 2, 2025
🕒 Time: 9 PM CET / 3 PM EST / 12 PM PST
➡️ Register: https://dfci.zoom.us/webinar/register/WN_0nAabJt1Qeyd8QsJjvEzOQ
📑 Paper: https://pmc.ncbi.nlm.nih.gov/articles/PMC12328236/
dvdgc13
Dr. Robert M Flight
Bioconductor