Mastodawn

🚀 SQZ v0.2.0 released!

🔄 Rewritten core algorithm → faster + more robust (fixes graph edge cases)
✨ New commands:
• compress-partial
• compress-additional
• compress-full (now works on compressed graphs)
• check-compressibility
• test

🔗 https://github.com/codialab/sqz/releases/tag/v0.2.0

#pangenomics #compression

Release Updated algorithm · codialab/sqz

What's changed Rewrite of the main algorithm, this version should be both faster and fixes a couple of issues were the old version ran into problems with certain graphs. Additionally, it adds funct...

GitHub

de.NBI & ELIXIR Germany Jun 12, 2025

@deNBI will offer 3 #workshops at #GCB2025, focusing on #cloud #computing, #pangenomics and #protein structure analysis. For more information see: https://www.denbi.de/news1/1904-de-nbi-offers-3-workshops-at-gcb2025

Pjotr Prins Feb 24, 2025

Want to level up in #pangenomics? Join our workshop, conference & biohackathon in #Memphis, May 11-15, 2025. Connect with leading scientists, embrace genomic diversity, and contribute to cutting-edge software. Register now! https://pangenome.github.io/MemPanG25/ #Bioinformatics #MemPanG25

MemPanG25

Physalia-courses Apr 15, 2024

🔬 Excited to launch the second edition of "Analysis of Prokaryotic Pangenomes" with @jomcinerney and Alan Beaven from @uniofnottingham 🧬
We are ready to dive deep into #pangenomics over the next 3 days and uncover fascinating insights! 🌟

Tim Downing Jun 14, 2023

MemPanG23 - Virtual Conference
#Pangenome #pangenomics #genomics Recordings https://www.youtube.com/watch?v=TaoRZYOOC1Y

MemPanG23 - Virtual Conference

YouTube

Frank Aylward Mar 28, 2023

Fascinating study!

The methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes

"Increased methanogenic growth temperature is associated with reduced genome size, and thermotolerant organisms...have larger core genome fractions, suggesting that genome size is governed by temperature rather than phylogeny. "

https://academic.oup.com/dnaresearch/article/30/1/dsac048/6862058

#genomics #pangenomics #microbiology

methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes

Abstract. Temperature is a key variable in biological processes. However, a complete understanding of biological temperature adaptation is lacking, in part beca

OUP Academic