de.NBI & ELIXIR Germany

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The de.NBI network provides bioinformatics services and comprehensive compute resources to researchers in the life sciences and biomedicine in Germany and Europe. Since August 2016 the German Node of ELIXIR, ELIXIR Germany, is run by de.NBI partners.

๐Ÿงฌ Service of the week:
Helixer โ€“ the deep learning powerhouse for accurate gene prediction in eukaryotic genomes. ๐Ÿš€

๐Ÿค– High Accuracy: Leveraging deep learning for precise predictions.
๐ŸŒ Diverse Taxa: Robust performance across a wide range of species.
๐Ÿ› ๏ธ User-Friendly: Minimal manual tuning required to get results.
๐ŸŽ“ Academic Access: Free for life scientists in academia!

Step into the future of genomics. ๐Ÿงฌโœจ

https://www.denbi.de/services-according-to-service-centers/1996-helixer-deep-learning-based-gene-prediction-for-eukaryotic-genomes

#Bioinformatics #Genomics #DeepLearning #OpenScience

๐Ÿš€ Bridging Gaps Between Research & Industry ๐Ÿค

Are you working on the future of Cloud Security? Join us in Berlin for the de.KCD Industry Forum!
๐ŸŒ What to expect:
In-depth dialogue on successful collaborations and the latest shifts in:
โœ… Secure Data Management ๐Ÿ’พ
โœ… Secure Processing Environments ๐Ÿ›ก๏ธ
โœ… Secure Infrastructure ๐Ÿ—๏ธ
โœ… Secure Use of AI ๐Ÿค–

๐Ÿ“ Location: Berlin
๐Ÿ“… Date: June 18, 2026
๐ŸŽŸ๏ธ Register here: https://events.hifis.net/event/3676/

#CloudSecurity #DataSecurity #CyberSecurity #AI #Infosec #deKCD

๐Ÿ“Œ DatenHorizonte #26: Research Data Management in the Life Sciences

FDM in den Life Sciences heiรŸt vernetzte Infrastrukturen, groรŸe Datenmengen und deren praktische Umsetzung.

Helena Schnitzer und Nils-Christian Lรผbke, Forschungszentrum Jรผlich (@fzj), geben Einblicke in de.NBI und ELIXIR Germany (@deNBI) mit Fokus auf bioinformatische Infrastrukturen und die de.NBI Cloud.

๐Ÿ—“๏ธ 11. Mai 2026 | 16:15โ€“17:15 Uhr
๐Ÿ•’ 16:15โ€“17:15 Uhr
๐Ÿ’ป https://uni-kiel.zoom-x.de/j/65691606217

Weitere Infos: https://fdm-sh.de/veranstaltungen/research-data-management-rdm-in-life-science-insights-from-the-de.nbi-elixir-germany-network/

๐Ÿงฌ Interested in genome assembly? Take a deeper dive at GTA 2026. Join us May 18โ€“22 for a free, virtual, asynchronous week of hands-on Galaxy training and support from the community.

Learn more and register: https://training.galaxyproject.org/training-material/events/2026-05-18-galaxy-academy.html#overview

Galaxy Training Academy 2026

The Galaxy Training Academy is a self-paced online training event for beginners and advanced learners who want to improve their data analysis skills in Galaxy and/or in popular fields in bioinformatics. Over the course of one week, we offer a diverse selection of learning tracks for you.

Galaxy Training Network

Would you like to confirm your cloning success with full plasmid sequencing?

NanoPlasmiQC allows automatic analysis of dozens of plasmids in a single ONT sequencing run. If you would like to test it with your own plasmids, read more in the preprint and feel free to reach out:

https://doi.org/10.64898/2026.04.01.715842

#Genomics #Bioinformatics #OpenScience #Biotechnology #SynBio #iGEM
@PuckerLab

๐Ÿงฌ Next @deNBI training course: Nanopore Sequencing 101: ๐Ÿงฌ

Join us for a deep dive into ONT technology! ๐Ÿš€

๐Ÿ“… 30 June - 2 July 2026
๐Ÿ“ Bielefeld, Germany
๐Ÿ’ป Focus: Linux basics, Library Prep, de.NBI Cloud, Genome Assembly & Metagenomics.
๐Ÿ› ๏ธ Tools: Dorado, Flye, CheckM, Bakta & more!

Perfect for PhDs & Postdocs. No prior bioinformatics knowledge required ๐Ÿง

Register here: https://www.denbi.de/training-courses-2026/2071-nanopore-sequencing-101-from-library-prep-to-genomics-and-metagenomic-analysis

#Genomics #Bioinformatics #Nanopore #ONT #Bielefeld #deNBI #ScienceTraining #Metagenomics #Linux

FORGET SILICON: de.NBI Switches to 100% Organic Server Racks! ๐Ÿงฌ๐ŸŒฟ

We are phasing out traditional GPUs in favor of our new chlorophyll-powered compute clusters.

Please remember to water your allocated cloud partition every Tuesday. Over-watering may result in corrupted files or unexpected fern growth in your metadata.

#GreenIT #Bioinformatics #SustainableScience #DNAstorage #AprilFools

๐Ÿš€ Cloud & AI Training Week! ๐Ÿงฌ๐Ÿ’ป

Join de.KCD and de.NBI Cloud for two intensive online workshops this April:

๐Ÿ—“๏ธ 23 April: Kubernetes Introduction ๐Ÿ—๏ธ
Go from cluster setup to full application deployment. Master the infrastructure behind modern scalable science.
-> https://www.denbi.de/training-courses-2026/2079-de-kcd-de-nbi-cloud-kubermatic-kubernetes-introduction-from-cluster-to-application

๐Ÿ—“๏ธ 24 April: LLMs in Practice ๐Ÿค–
Move beyond simple prompting! Learn to build AI agents specifically for bioinformatics challenges.
-> https://www.denbi.de/training-courses-2026/2080-de-kcd-de-nbi-cloud-llms-in-practice-from-prompts-to-simple-agents-in-bioinformatics

๐Ÿ“ Where: Online

#Bioinformatics #LLM #AI #Training

๐Ÿ“ข Training Clinic: Level Up Your F2F Training! ๐Ÿซโœจ

Tired of passive lecturing? Join us for our 9th session where we transform traditional face-to-face training into high-impact, dynamic learning experiences! ๐Ÿš€

๐Ÿ—“๏ธ Date: 5 May 2026
๐Ÿ• Time: 10:00 - 11:00 (Online)

Whatโ€™s on the agenda?
๐ŸŽฎ Gamification
๐Ÿ”„ Flipped Classroom
๐Ÿ“ฑ Interactive Formats
๐Ÿค Experience Exchange

๐Ÿ”— Register here: https://www.denbi.de/training-courses-2026/2078-training-clinic-may-2026

#Bioinformatics #Training #EdTech #FAIRtraining #OpenScience ๐Ÿงฌ๐Ÿ’ป

Have something to share at #GCC2026? Talk abstract submissions are due April 6th! Join us in Clermont-Ferrand, France, June 22โ€“24, and share your work with the Galaxy community.โœจ

Submit yours now: https://galaxyproject.org/events/gcc2026/abstracts/

2026 Galaxy Community Conference (GCC2026)

The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.