nf-coreJun 4

Pipeline release! nf-core/pixelator v4.1.2 - nf-core/pixelator 4.1.2!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.1.2

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 4.1.2 · nf-core/pixelator

[4.1.2] - 2026-06-04 Enhancements & fixes Update pixelator container to 0.28.0. This fixes a major performance regression in the graph step, which caused very high memory usage. By @johandahlberg ...

GitHub
jobRxivJun 2

Postdoctoral Fellow in Computational Biology
Temple University

See the full job description on jobRxiv: https://jobrxiv.org/job/temple-university-27778-postdoctoral-fellow-in-computational-biology/

#BioinformaticsandComputationalBiology #cancergenomics #epigenomics #singlecellomics #spatialomics #ScienceJobs #hiring #research
https://jobrxiv.org/job/temple-university-27778-postdoctoral-fellow-in-computational-biology/?fsp_sid=12613

Postdoctoral Fellow in Computational Biology

Post a job in 3min, or find thousands of job offers like this one at jobRxiv!

jobRxiv
nf-coreMay 29

Pipeline release! nf-core/pixelator v4.1.1 - nf-core/pixelator 4.1.1!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.1.1

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 4.1.1 · nf-core/pixelator

[4.1.1] - 2026-05-29 Enhancements & fixes Improve documentation by @Aratz #216 Update pixelator by @Aratz #217 Software dependencies Dependency Old version New version pixelator 0.27.1 0.27.2

GitHub
nf-coreMay 28

Pipeline release! nf-core/pixelator v4.1.0 - nf-core/pixelator 4.1.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.1.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 4.1.0 · nf-core/pixelator

[4.1.0] - 2026-05-28 Enhancements & fixes Update pixelator container to 0.27.1 by @johandahlberg #212 Denoise graph before sample calling step by @Aratz #212 Add ACE and PLS denoising by @Aratz #2...

GitHub
nf-coreMay 25

Pipeline release! nf-core/pixelator v4.0.0 - nf-core/pixelator 4.0.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 4.0.0 · nf-core/pixelator

[4.0.0] - 2026-05-19 Added Add Proxiome V2 workflow support, enabling sample pooling and processing of up to 8,000 cells per run by @Aratz #204, #205 Enhancements & fixes Use nextflow strict syn...

GitHub
nf-coreMar 9

Pipeline release! nf-core/pixelator v3.0.1 - nf-core/pixelator 3.0.1!
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/3.0.1

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

nf-coreMar 4

Pipeline release! nf-core/pixelator v3.0.0 - nf-core/pixelator 3.0.0!
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/3.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 3.0.0 · nf-core/pixelator

[3.0.0] - 2026-02-23 Changed Set default pna_graph_component_size_min_threshold to 8000 instead of null (i.e. automatic) by @ptajvar #183. Removed Support for MPX in the pipeline by @johandahlbe...

GitHub
nf-coreJan 19

Pipeline release! nf-core/pixelator v2.3.1 - nf-core/pixelator 2.3.1!
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/2.3.1

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 2.3.1 · nf-core/pixelator

[2.3.1] - 2025-01-14 Update usage documentation by @vincent-van-hoef #176 Use PNA data in test profile by @Aratz #177

GitHub
Xavier Grau-Bové🌾Dec 22, 2025

New paper from the lab!

Decoding cnidarian cell type gene regulation, now in Nature Ecology and Evolution

https://www.nature.com/articles/s41559-025-02906-1

From a personal POV, tagging along with https://martaig.bsky.social and https://aelek.bsky.social while they developed this project has been one big learning opportunity. In Nematostella biology, clever omics, evo-devo, and more.

Check out this thread on bluesky to learn more:

https://bsky.app/profile/arnausebe.bsky.social/post/3makyprqrfk2g

#evodevo #evolution #development #nematostella #singlecellomics

Decoding cnidarian cell type gene regulation - Nature Ecology & Evolution

This study reconstructs the gene regulatory networks that define cell types in the sea anemone Nematostella vectensis, providing a valuable resource for comparative regulatory genomics and the evolution of new cell types.

Nature
Xavier Grau-Bové🌾Dec 22, 2025

New paper from the lab!

Decoding cnidarian cell type gene regulation, now in Nature Ecology and Evolution

https://www.nature.com/articles/s41559-025-02906-1

From a personal POV, tagging along with https://martaig.bsky.social and https://aelek.bsky.social while they developed this project has been one big learning opportunity. In Nematostella biology, clever omics, evo-devo, and more.

Check out this thread on bluesky to learn more:

https://bsky.app/profile/arnausebe.bsky.social/post/3makyprqrfk2g

#evodevo #evolution #development #nematostella #singlecellomics

Decoding cnidarian cell type gene regulation - Nature Ecology & Evolution

This study reconstructs the gene regulatory networks that define cell types in the sea anemone Nematostella vectensis, providing a valuable resource for comparative regulatory genomics and the evolution of new cell types.

Nature