nf-coreMar 9

Pipeline release! nf-core/pixelator v3.0.1 - nf-core/pixelator 3.0.1!
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/3.0.1

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

nf-coreMar 4

Pipeline release! nf-core/pixelator v3.0.0 - nf-core/pixelator 3.0.0!
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/3.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 3.0.0 · nf-core/pixelator

[3.0.0] - 2026-02-23 Changed Set default pna_graph_component_size_min_threshold to 8000 instead of null (i.e. automatic) by @ptajvar #183. Removed Support for MPX in the pipeline by @johandahlbe...

GitHub
nf-coreJan 19

Pipeline release! nf-core/pixelator v2.3.1 - nf-core/pixelator 2.3.1!
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/2.3.1

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 2.3.1 · nf-core/pixelator

[2.3.1] - 2025-01-14 Update usage documentation by @vincent-van-hoef #176 Use PNA data in test profile by @Aratz #177

GitHub
Xavier Grau-Bové🌾Dec 22

New paper from the lab!

Decoding cnidarian cell type gene regulation, now in Nature Ecology and Evolution

https://www.nature.com/articles/s41559-025-02906-1

From a personal POV, tagging along with https://martaig.bsky.social and https://aelek.bsky.social while they developed this project has been one big learning opportunity. In Nematostella biology, clever omics, evo-devo, and more.

Check out this thread on bluesky to learn more:

https://bsky.app/profile/arnausebe.bsky.social/post/3makyprqrfk2g

#evodevo #evolution #development #nematostella #singlecellomics

Decoding cnidarian cell type gene regulation - Nature Ecology & Evolution

This study reconstructs the gene regulatory networks that define cell types in the sea anemone Nematostella vectensis, providing a valuable resource for comparative regulatory genomics and the evolution of new cell types.

Nature
Xavier Grau-Bové🌾Dec 22

New paper from the lab!

Decoding cnidarian cell type gene regulation, now in Nature Ecology and Evolution

https://www.nature.com/articles/s41559-025-02906-1

From a personal POV, tagging along with https://martaig.bsky.social and https://aelek.bsky.social while they developed this project has been one big learning opportunity. In Nematostella biology, clever omics, evo-devo, and more.

Check out this thread on bluesky to learn more:

https://bsky.app/profile/arnausebe.bsky.social/post/3makyprqrfk2g

#evodevo #evolution #development #nematostella #singlecellomics

Decoding cnidarian cell type gene regulation - Nature Ecology & Evolution

This study reconstructs the gene regulatory networks that define cell types in the sea anemone Nematostella vectensis, providing a valuable resource for comparative regulatory genomics and the evolution of new cell types.

Nature
nf-coreDec 15

Pipeline release! nf-core/pixelator v2.3.0 - nf-core/pixelator 2.3.0!
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/2.3.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 2.3.0 · nf-core/pixelator

[2.3.0] - 2025-12-11 From this release onwards, there will not be a default panel selected, i.e. as a user you must specify an exact version of the panel you want to use in your samplesheet, e.g. p...

GitHub
nf-coreSep 17, 2025

Pipeline release! nf-core/pixelator v2.1.0 - nf-core/pixelator 2.1.0!

Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/2.1.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator 2.1.0 · nf-core/pixelator

[2.1.0] - 2025-09-17 Enhancements & fixes Move to using quay.io as the container source, to avoid issues with users needing to login to access the Github Container Registry by @johandahlberg in #1...

GitHub
Credence Research Europe LTDAug 30, 2025

The Single Cell Omics Market is booming—expected to surge from USD 1.96B in 2024 to USD 6.34B by 2032, at a CAGR of 15.8%. Precision medicine, multi-omics integration, and AI analytics are fueling growth.

Innovators like Illumina, 10x Genomics, Danaher, BD, CYTENA, and PerkinElmer are leading the way.

👉 View full report here.
https://www.credenceresearch.com/report/single-cell-omics-market

#SingleCellOmics #GenomicInnovation #BiotechResearch

nf-coreJun 24, 2025

Pipeline release! nf-core/pixelator v2.0.0 - nf-core/pixelator 2.0.0!

Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/2.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

nf-coreJan 22, 2025

Pipeline release! nf-core/pixelator v1.4.0 - nf-core/pixelator v1.4.0!

Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/1.4.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pixelator v1.4.0 · nf-core/pixelator

What's Changed Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in #111 Add graph refinement options for pixelator 0.19 by @fbdtemme in #112 Fix validation issues after nf-core/...

GitHub