Mastodawn

🔬 Join our first training course in 2026
📅 13 January | 💻 Online
👨‍🏫 Educators: Timo Sachsenberg & Tom Müller (CIBI)
🌟 Get an overview of the OpenMS ecosystem
🧬 Discover automation, customization, & reproducibility with pyOpenMS
✨ Explore untargeted metabolomics workflows like UMetaFlow
Perfect for metabolomics researchers, students, and anyone curious about programmable MS data analysis!
🔗 https://www.denbi.de/training-courses-2026/2008-pyopenms-for-metabolomics
#Metabolomics #OpenMS #pyOpenMS #UMetaFlow #Bioinformatics #Python #OpenScience

nf-core Jan 7

Pipeline release! nf-core/mhcquant v3.1.0 - 3.1.0 - BlüBa!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.1.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Peter J. Jones Dec 12

It's official, I'm attending the EuBIC-MS winter school in January. During the education day my team will will be presenting courses on #proteomics and mass spectrometry using #OpenMS in Python. There's still time to sign up: https://eubic-ms.org/events/2026-winter-school/

#bioinformatics

EuBIC-MS Winter School 2026

Join us for the EuBIC-MS Winter School 2026 – a biennial meeting focused on computational approaches for mass spectrometry–based omics. The event brings together leading scientists and early-career researchers for keynote lectures, hands-on workshops, and networking opportunities, fostering collaboration and…

EuBIC-MS

de.NBI & ELIXIR Germany Oct 21

Next @denbi.bsky.social #training course: 🔬🚀 OpenMS Training & Open House 2025 in Toronto!
📅 Nov 9 | 10AM–2PM | 🏛️ U of Toronto
Hands-on sessions in #proteomics & #metabolomics: OpenMS, pyOpenMS, WebApps, DIA, data viz & more.
🤝 https://www.denbi.de/training-courses-2025/1965-openms-training-open-house-2025
#OpenMS #MassSpec #Bioinformatics

nf-core May 22, 2025

Pipeline release! nf-core/mhcquant v3.0.0 - MHCquant 3.0.0 - Monrepos!

Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.0.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Release MHCquant 3.0.0 - Monrepos · nf-core/mhcquant

Added Added PYOPENMS_CHROMATOGRAMEXTRACTOR extracting MS1 Chromatograms and visualize them in multiQC report #329 Added OPENMS_IDMASSACCURACY and DATAMASH_HISTOGRAM to compute fragment mass errors...

GitHub

Dr. Samuel Wein Jan 30, 2025

Proud to announce our latest paper: "OpenMS WebApps: Building User-Friendly Solutions for MS Analysis".

We've been working for the last couple of years to provide an interface for people to try out the power of #OpenMS without having to install or download anything. We think the webapp concept works well for this, and with the templates we provide we also think it should be handy for folks wanting to deploy their own locally hosted apps.

Check out the paper here: https://pubs.acs.org/doi/10.1021/acs.jproteome.4c00872

#OpenScience
#opensource
#TeamMassSpec
#Proteomics
#Metabolomics

Dr. Samuel Wein Sep 20, 2024

More exciting #OpenMS news:
We are proud to announce the release of OpenMS 3.2, now with support for #KNIME 5.3 better export integration with #SIRIUS and improvements to our spectra viewer TOPPView. Read about all the improvements and find a link to download the installers at https://openms.de/news/release3.2/
#OpenScience #TeamMassSpec #opensource

OpenMS

We have just release OpenMS 3.2 click here to see changes and improvements

Dr. Samuel Wein Sep 5, 2024

Hi All,
#OpenMS is having our annual user meeting in #Berlin ahead of #HUPO this year October 17-18. For anyone one #TeamMassSpec who is interested in #OpenScience we would love to have you. More information can be found here https://openms.de/news/usermeeting2024/