Haojia WuJun 10
CellBouncer, a unified toolkit for single-cell demultiplexing and ambient RNA analysis, reveals hominid mitochondrial incompatibilities #singlecell #demultiplexing #mitochondrial
https://www.cell.com/cell-genomics/fulltext/S2666-979X(26)00137-0
nf-coreApr 17

Pipeline release! nf-core/demultiplex v1.7.1 - 1.7.1!
Demultiplexing pipeline for sequencing data
Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.7.1

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Release 1.7.1 · nf-core/demultiplex

What's Changed Bump to v1.7.1dev by @SPPearce in #354 Important! Template update for nf-core/tools v3.5.1 by @nf-core-bot in #355 update MultiQC and restore missing file from snapshots by @maxulys...

GitHub
nf-coreOct 28, 2025

Pipeline release! nf-core/demultiplex v1.7.0 - 1.7.0!

Demultiplexing pipeline for sequencing data

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.7.0

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Release 1.7.0 · nf-core/demultiplex

What's Changed Adding mgikit demultiplexing by @ziadbkh in #299 Important! Template update for nf-core/tools v3.3.2 by @nf-core-bot in #334 Change samplesheet to point to trimmed fastqs by @SPPea...

GitHub
Show threadLeszekJun 10, 2025
SeqTagger v1.0d is officially released :)
It feels great to break the news on Mastodon first!
@nanopore #direct #RNA #demultiplexing
https://github.com/novoalab/SeqTagger/?tab=readme-ov-file#benchmarking-of-b96_rna004
GitHub - novoalab/SeqTagger: Super-fast and accurate demultiplexing of direct RNA-seq runs.

Super-fast and accurate demultiplexing of direct RNA-seq runs. - GitHub - novoalab/SeqTagger: Super-fast and accurate demultiplexing of direct RNA-seq runs.

GitHub
nf-coreApr 24, 2025

Pipeline release! nf-core/demultiplex v1.6.1 - 1.6.1!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.6.1

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Release 1.6.1 · nf-core/demultiplex

What's Changed Fix adapter parsing from samplesheets by @edmundmiller in #315 Test samplesheet adapter removal at the pipeline level by @edmundmiller in #316 Json schema improvements by @Oliversin...

GitHub
LeszekMar 13, 2025
shamelessly sharing our recent work: Rapid and accurate #demultiplexing of
direct #RNA #nanopore sequencing datasets with SeqTagger
#paper
https://genome.cshlp.org/content/early/2025/01/29/gr.279290.124.full.pdf
nf-coreFeb 19, 2025

Pipeline release! nf-core/demultiplex v1.6.0 - 1.6.0!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.6.0

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Release 1.6.0 · nf-core/demultiplex

What's Changed Add samplesheet generation for sarek/methylseq by @lmfaber in #308 Replace [] with null as default by @FriederikeHanssen in #310 New Contributors @lmfaber made their first contrib...

GitHub
nf-coreDec 10, 2024

Pipeline release! nf-core/demultiplex v1.5.4 - 1.5.4 - 2024-12-10!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.5.4

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Release 1.5.4 - 2024-12-10 · nf-core/demultiplex

What's Changed Post 1.5.3 release version bump by @atrigila in #287 Fix parameter validation in test_full and workflow dispatch by @atrigila in #290 Bump samshee by @apeltzer in #291 Fixed email b...

GitHub
LeszekNov 8, 2024

VERY excited to share SeqTagger with the world! https://github.com/novoalab/SeqTagger/

If you want to learn more about our super-fast and accurate #demultiplexing tool for #direct #RNA #sequencing (DRS), check out the thread below. #nanopore
https://www.biorxiv.org/content/10.1101/2024.10.29.620808v1

We started developing SeqTagger which follows a very straightforward logic: Let’s demultiplex by basecalling the #DNA #barcode sequence (on an RNA pore) and aligning it to a set of reference barcode sequences.

GitHub - novoalab/SeqTagger: Super-fast and accurate demultiplexing of direct RNA-seq runs.

Super-fast and accurate demultiplexing of direct RNA-seq runs. - GitHub - novoalab/SeqTagger: Super-fast and accurate demultiplexing of direct RNA-seq runs.

GitHub
nf-coreNov 6, 2024

Pipeline release! nf-core/demultiplex v1.5.3 - 1.5.3 - 2024-11-06!

Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.5.3

#bases2fastq #bcl2fastq #demultiplexing #elementbiosciences #illumina #nfcore #openscience #nextflow #bioinformatics

Release 1.5.3 - 2024-11-06 · nf-core/demultiplex

1.5.3 - 2024-11-06 Added Changed #275 Update samshee module from nf-core. #276 Template update for nf-core/tools v3.0.2 #284 nf-core modules and subworkflows update. nf-test version update. #285 B...

GitHub