Manager, IBIS Bioinformatics Platform
Vision : Accelerating genomic research in the fields of conservation, agriculture, forestry, human health, and fundamental research.
Work: #bioinformatics #genomics #genetics #sequencing #WGS #lcWGS #RADseq #eDNA #metabarcoding #genomeAssembly #transcriptomics
Geek: #linux #bash #python #rstats #vim #tmux
Interests: #outdoors #strengthTraining #gardening #reading #books #poetry
| GitHub | https://github.com/enormandeau |
| Google Scholar | https://scholar.google.com/citations?hl=en&user=m9F47HYAAAAJ |
This course is aimed at researchers who want to gain confidence in using R and tidyverse for data analysis and visualisation. Over three days, we’ll cover data wrangling, plotting with ggplot2, and creating reproducible reports with Quarto.
https://www.physalia-courses.org/courses-workshops/r-tidyverse/
Whether you're a student, researcher, or professional looking to build a strong foundation in GWAS analysis, this course is designed to equip you with the core tools and knowledge needed to confidently approach GWAS data and workflows.
https://www.physalia-courses.org/courses-workshops/course49/
🚀 June is packed at Physalia!
From LiDAR to GWAS, ML for multi-omics integration, stats in R, Python & data visualisation—it is all about levelling up your skills.
📚 New topics, 🔬 expert instructors, and 💡 hands-on learning.
Explore our full course lineup: https://www.physalia-courses.org/courses-workshops/
All our courses are taught in English. Attendees are seated on a first-come, first-served basis. All sessions are recorded to accommodate participants from all time zones, so you can access course content at a time that suits you best. At the end of each course, participants will receive a certificate of participation that includes all course details and the corresponding number of credits.
🚀 We just released Alignoth v0.14.0!
The HTML view now comes with a control panel, read filtering, multi-selection via shift-click, and a more interactive read info table.
Check it out: https://github.com/alignoth/alignoth
Heng Li's bliog: Short RNA-seq read alignment with minimap2 https://lh3.github.io/2025/04/18/short-rna-seq-read-alignment-with-minimap2
"TL;DR: the new preset splice:sr in minimap2 can align short RNA-seq reads. It is similar to STAR in resource usage, approaches STAR in junction accuracy, and is overall better at SNP calling."
🧬 Autumn School in Bioinformatics
📅 online, 20–24 October
From genome assembly & annotation to RNAseq, phylogenomics, and reproducible workflows with Snakemake, Nextflow, Docker, & Singularity—this course covers it all.
@Passdan & Christoph Hahn
https://www.physalia-courses.org/courses-workshops/course68/
🚨 May at Physalia = 🔥
An amazing lineup of courses (and instructors) is coming your way! Whether you're into genomics, stats, machine learning or programming — we’ve got you covered.
Check them out: https://www.physalia-courses.org/courses-workshops/
All our courses are taught in English. Attendees are seated on a first-come, first-served basis. All sessions are recorded to accommodate participants from all time zones, so you can access course content at a time that suits you best. At the end of each course, participants will receive a certificate of participation that includes all course details and the corresponding number of credits.
🚀 June is packed at Physalia!
From LiDAR to GWAS, ML for multi-omics integration, stats in R, Python & data visualisation—it is all about levelling up your skills.
📚 New topics, 🔬 expert instructors, and 💡 hands-on learning.
Explore our full course lineup: https://www.physalia-courses.org/courses-workshops/
Physalia-courses
Felix Wiegand
My Cat is British
MOULE
Pierre Lindenbaum
Anemone Nemorosa