Data Science Researcher position at IRTA

#genomics, #genetics, and breeding in #crops, including the development of data pipelines, predictive models, and #algorithms to enhance #phenotypic predictions from genomic data.

https://www.irta.cat/en/work-at-irta/ #PlantJobs

Work at IRTA ~ IRTA

IRTA
Sorting out the #taxonomy of #Populus is hampered by #hybridization, #phenotypic plasticity, and #convergence.
Mi et al. get some answers in this study of the #distribution, #origin, & taxonomy of two🔑#species.
https://doi.org/10.1111/jse.13074
@WileyEcolEvol
#JSE #PlantSci #Evolution #botany
#BAMBOO-zled again!🎍
Luo et al.'s study of #phenotypic modifications in alpine bamboos in the Hengduan Mountains of Southwest #China reveals continuous #genetic adaptation to high elevations!
https://doi.org/10.1111/jse.13038
@WileyEcolEvol
#ecology #PlantSci #biodiversity #evolution #botany

#Genomic and #phenotypic characterization of an #Oropouche virus #strain implicated in the 2023-24 large-scale #outbreak in #Brazil http://biorxiv.org/cgi/content/short/2024.08.02.606252v1?rss=1

Our data shows that OROV can readily infect and replicate in non-human #primate #cells, supporting the role of non-human primates as important #reservoirs. Phylogenetic data supports a direct introduction of the same lineages causing the 2022-24 outbreak in Brazil from the #Amazonas state, the epicenter of the epidemics in Brazil.

#Genotypic & #phenotypic susceptibility of emerging avian #influenza A viruses to
#NAIs & cap-dependent endonuclease #inhibitors, Antiviral Res.: https://www.sciencedirect.com/science/article/pii/S0166354224001682?via%3Dihub

Frequencies of markers of resistance to antivirals were low among >20,000 avian influenza A viruses studied. #H5Nx, #H7Nx, & #H9N2 viruses were susceptible to sub-nanomolar concentrations of antivirals. NA-I222M, but not NA-S246N or NA-I222V, in H5N1 confers reduced inhibition by #oseltamivir.

Molecular Markers and Mechanisms of Influenza A Virus Cross-Species Transmission and New Host Adaptation, Viruses: https://www.mdpi.com/1999-4915/16/6/883

We discuss the #genetic and #phenotypic #traits associated with the #airborne #transmission of influenza A viruses in order to provide theoretical #guidance for the #surveillance of new strains with #pandemic potential and the prevention of pandemics.

Molecular Markers and Mechanisms of Influenza A Virus Cross-Species Transmission and New Host Adaptation

Influenza A viruses continue to be a serious health risk to people and result in a large-scale socio-economic loss. Avian influenza viruses typically do not replicate efficiently in mammals, but through the accumulation of mutations or genetic reassortment, they can overcome interspecies barriers, adapt to new hosts, and spread among them. Zoonotic influenza A viruses sporadically infect humans and exhibit limited human-to-human transmission. However, further adaptation of these viruses to humans may result in airborne transmissible viruses with pandemic potential. Therefore, we are beginning to understand genetic changes and mechanisms that may influence interspecific adaptation, cross-species transmission, and the pandemic potential of influenza A viruses. We also discuss the genetic and phenotypic traits associated with the airborne transmission of influenza A viruses in order to provide theoretical guidance for the surveillance of new strains with pandemic potential and the prevention of pandemics.

MDPI
Aguirre-Santoro et al. use a #phylogenomic framework to explore the #phenotypic #evolution and biogeography of Puya in the #Andean slopes and sky island ecosystems in this gorgeous new #JSE paper!
https://doi.org/10.1111/jse.13062
@wileyecolevol #PlantSci #botany
Widespread inversions shape the genetic and phenotypic diversity in rice

A new study titled "Widespread inversions shape the genetic and phenotypic diversity in rice" and published in Science Bulletin has been led by Prof. Lianguang Shang (Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences), Prof. Qian Qian (Yazhouwan National Laboratory), and Prof. Shaokui Wang (State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University).

"Phenotypic adaptation to #temperature in the #mosquito #vector, Aedes aegypti" https://onlinelibrary.wiley.com/doi/10.1111/gcb.17041

"... We identified significant #phenotypic variation in thermal tolerance between populations ... Moreover, these differences in thermal tolerance translated to shifts in the thermal performance curves for multiple life-history traits, leading to differences in overall fitness ..."

#Dengue #AedesAegypti

How #plant species respond to variable #light conditions is key to their #ecological #adaptation. Here, Niu et al. explore #phenotypic and #transcriptional features of Araliaceae spp. under distinct light environments.
https://doi.org/10.1111/jse.13043
@WileyEcolEvol
#JSE #PlantSci #PlantScience #botany #evolution