New co-authored manuscript on liver cancer multi-omics:

Integrated Multi-omic Analyses Reveal Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinoma
Anspach et al., https://www.jlr.org/article/S0022-2275(26)00107-0/fulltext

8 patients, *paired samples* of cancer and adjacent normal!! (made the statistics so nice to work with and look for correlations between rna-seq and metabolomics).

#Bioinformatics #Metabolomics #RNASeq

Everytime I think that uploaded #metabolomics data can't get any weirder, I find something else.

Today, it's 1 sample out of 64 that has negative values. ONE out of 64 that has negative values. Unless something weird was done in processing, either all of them should contain negative values or none of them should. 🤦‍♂️

All missing for one sample, that sort of, might make sense. But 1 of 64 has negatives? WTF. And it's not just one value, it's 64 of 407.

#bioinformatics

📢 Call for Papers: Computational Spatial Omics - Multimodal Strategies for Systems Biology and Biomedical Discovery

⏳ Submission Deadline: 31 December 2026

🔗 Submit your work: https://spj.science.org/journal/csbj/si/computational-spatial-omics

#CallForPapers #SpatialOmics #SpatialTranscriptomics #SpatialProteomics #Metabolomics #Lipidomics #Multiomics #ComputationalBiology #SystemsBiology #Bioinformatics #AIinHealthcare #DigitalPathology #GraphNeuralNetworks #PrecisionMedicine

【🎉Latest accepted article】
Marine heatwaves intensify competition between toxigenic microalgae and cultured macroalgae

#HarmfulAlgalBloom | #InterspecificCompetition | #MarineHeatwave | #Metabolomics | #SeaweedAquaculture | #Toxicity

https://doi.org/10.1093/jpe/rtag108

Job Alert

Research Associate in Computational Metabolomics (m/f/d)

Location: Halle (Saale)
Deadline 2026-06-30

https://www.academiceurope.com/ads/research-associate-computational-metabolomics-m-f-d/

#hiring #ComputationalBiology #Metabolomics #Bioinformatics #PlantScience #Postdoc #PhD #DataScience #softwareengineering

UC San Diego: From Molecules to Meaning: A Search Engine for the Chemistry of Life. “An international team led by researchers at University of California San Diego and University of California, Riverside has developed a free, web-based platform designed to make public metabolomics data more accessible.”

🇮🇹 Greetings from Rome!

Last week, the HUPO-PSI Spring Meeting at the CNR brought together the global community to advance open data standards for #proteomics and #metabolomics. 🧬

@deNBI was thrilled to be part of the discussions! We organized a successful workshop Metabolomics & MS Data Standards fostering collaboration across the field. 🤝

Standardization is key to reproducible science! 🚀

#HUPOPSI #OpenData #Bioinformatics #deNBI #Metabolomics #MassSpec #FAIRdata #ScienceEvents

Working with data from Metabolomics Workbench again, and it always feels like the data is yelling at me with the fields in all caps.

Now that I've double checked, the Protein Data Bank file format was like this too, all caps everywhere (even more so).

#metabolomics #bioinformatics

【🎉Latest accepted article】
#NativePlantInvasion mediates coupled homogenization of #SoilMetabolomes and microbial functional groups on the Qinghai-Tibetan Plateau

#Allelopathy | #AlphaDiversity | #BetaDiversity | #BioticHomogenization | #Metabolomics

https://doi.org/10.1093/jpe/rtag090