PuckerLabInterested in the genetic secrets of your favorite plant?
A genome sequence might reveal them. We wrote down a workflow from DNA extraction & sequencing to genome sequence assembly & annotation. It includes a hands-on guide with example commands.
Boas Pucker
@boas_pucker
- 100 Followers
- 55 Following
- 219 Posts
Prof. at Uni Bonn | Plant Biotechnology & Bioinformatics (@PuckerLab) | 🌱#plant 🧬#genomics #evolution #Python #DataScience | my views | https://www.pbb.uni-bonn.de
Excited about plant pigments? Anthocyanin biosynthesis is a hot topic in plant biology, judging by the growing number of publications #FlavonoidFriday
https://doi.org/10.20944/preprints202603.2058.v1 & https://shorturl.at/Hrm4c
Excited about plant pigments? Anthocyanin biosynthesis is a hot topic in plant biology, judging by the growing number of publications #FlavonoidFriday
https://doi.org/10.20944/preprints202603.2058.v1 & https://shorturl.at/Hrm4c
Completing "Plant Bioinformatics" 🌱
Students worked with CLI, big data, and cloud computing (thanks to de.NBI). Critically assessed papers and reproduced analyses. Alarming how often methods are incomplete or data is not shared. Teaching #OpenScience is crucial.
🔗 https://github.com/bpucker/teaching
Completing "Plant Bioinformatics" 🌱
Students worked with CLI, big data, and cloud computing (thanks to de.NBI). Critically assessed papers and reproduced analyses. Alarming how often methods are incomplete or data is not shared. Teaching #OpenScience is crucial.
🔗 https://github.com/bpucker/teaching
Katharina is presenting her pigment engineering work at #GCSB2026. Check out P50 and read her recent review paper (https://doi.org/10.1111/plb.70047) to learn more
#SynBio #PlantBiotech #Yeast
#SynBio #PlantBiotech #Yeast
Samuel Nestor MeckoniThis week, I teach the students of WBIO-A-08 how to use the CLI. Currently they are having a lot of fun with piping 😈
They already learned how to create a @deNBI VM, transfer files, install tools via apt, and how to use a lot of small helpful utilities. In the next days some more bioinformatics orientated tools will follow.
RE: https://mstdn.science/@samnm/116205368323560229
See what @samnm achieved with our students within only 1.5 days 👇 #Bioinformatics #Genomics
We are excited to welcome Zoë as a new member of our group. Her work with molecular biology methods will contribute to our ongoing research on functional plant genomics. We are looking forward to the ideas and energy she brings to the lab.
https://www.izmb.uni-bonn.de/en/pbb/team
#PlantScience #MolecularBiology #PlantGenomics #TeamScience #Research
@boas_pucker
We are delighted to welcome Hannah to our group. She will conduct long-read sequencing to explore plant genomes. We are excited to have her on board and look forward to amazing discoveries ahead!
https://www.izmb.uni-bonn.de/en/pbb/team
#PlantGenomics #LongReadSequencing #Bioinformatics #Nanopore #PlantScience #TeamScience
@boas_pucker
