Can #ancient #DNA complement #archaeoentomology? 🐜🧬 This study compares #sedaDNA and morphology from #Gallo-Roman wells, showing each captures different parts of past #arthropod communities. Together these methods revealed richer environmental signals.
https://www.nature.com/articles/s41598-026-45188-8
#MetagenomicsMonday #SPAAM #aDNA
Archaeoentomological SedaDNA from two French gallo-roman wells reveals the presence of arthropods not identified by sclerotized remains - Scientific Reports

Archaeoentomology reconstructs past environments and human activities through the analysis of insect remains preserved in archaeological deposits. Although different arthropod groups can be identified when preservation conditions allow, taxonomic resolution often depends on the preservation of diagnostic sclerotized structures, which limits the detection of poorly preserved or very small taxa. Here, we evaluate whether ancient sedimentary DNA (sedaDNA) can complement conventional morphological identifications and provide comparable and reproducible information from the same archaeological samples. We analyzed sediments from two water-saturated Gallo-Roman wells in France using a metabarcoding approach and directly compared the molecular results with morphological identifications made on the corresponding layers. Several groups detected by sedaDNA were absent from the morphological assemblages, despite being ecologically plausible in the studied contexts. Conversely, some beetle taxa, despite being well represented morphologically, were not detected in the DNA data. SedaDNA and morphological data revealed different communities for the two wells. One well exhibited low taxonomic and phylogenetic diversity and was largely dominated by bird mites, generalist decomposers, and other weakly sclerotized arthropods, while the other well had greater overall diversity and was dominated by insects associated with an open environment, likely consisting of arable land. Despite these differences in taxonomic composition, these results highlight the role of local environmental conditions and human practices in shaping distinct arthropod communities at the two archaeological sites. By integrating molecular and morphological data, this comparison demonstrates that sedaDNA does not replace the fossil record but expands the detectable fraction of the arthropod community.

Nature
This #MetagenomicsMonday, we’re highlighting two #aDNA studies published in Nature on our beloved human best friend — the #dog! 🐕🧬By ~14,000 years ago, #dogs were already part of human life across #Eurasia. aDNA shows they moved with different #hunter-gatherer groups, were exchanged between cultures, and later mixed with new lineages, shaping the dogs we know today.
https://www.nature.com/articles/s41586-026-10112-7
https://www.nature.com/articles/s41586-026-10170-x
#SPAAM #domestication
Genomic history of early dogs in Europe - Nature

Genome-wide analysis shows European dogs existed by 14,200 years ago, were already genetically distinct, received less Neolithic Southwest Asian admixture than humans did and contributed substantially to later European dogs.

Nature
On this week's #MetagenomicsMonday: #aDNA study 🧬traces the roots of French #wine! 🍇 Roman trade, clonal propagation, and even a medieval grape identical to modern #PinotNoir emerge from 4,000 years of #viticulture.
https://www.nature.com/articles/s41467-026-70166-z
#SPAAM #archaeogenomics #archaeobotany #domestication #agriculture
Ancient DNA reveals 4000 years of grapevine diversity, viticulture and clonal propagation in France - Nature Communications

Here, the authors present aDNA from 49 grape pips spanning the Bronze Age to Medieval period in France and surrounding areas. They find evidence of long-distance exchange of domestic varieties through vegetative clones and one Medieval sample that is nearly identical to modern Pinot Noir.

Nature
400 million #herbarium specimens, but how good is their #DNA? 🌿🧬 This study shows preservation depends on climate at collection and highlights their value for studying DNA decay over time.
https://doi.org/10.1093/gigascience/giag026
#MetagenomicsMonday #SPAAM #aDNA #palaeobotany #museumscience #ancientDNA
What did #ancient #viral #ecosystems look like? 🦠🧬 Sedimentary #aDNA from lakes and oceans reveals 2,000+ viral taxa and shows how #virus–host interactions changed from the #Pleistocene to today.
https://doi.org/10.1093/ismejo/wrag025
#MetagenomicsMonday #SPAAM #aDNA #sedaDNA
DNA virus–host patterns in lake and marine environments over the last glacial cycle

Abstract. Viruses are integral to population dynamics, biogeochemical cycling, and host evolution, making them essential for ecosystem function. We explore

OUP Academic
What did #cave #bears eat? 🐻 It seems that diet wasn’t shaped by #genetics, sex, or #environment. Instead, #ancient #DNA 🧬 + #isotopes suggest individuals learned their own #foraging strategies.
https://doi.org/10.1016/j.isci.2025.113920
#MetagenomicsMonday #SPAAM #aDNA
Ancient #DNA 🧬 uncovers hidden diversity in #treponemal disease. A 5,500-year-old #genome from Colombia reveals a previously unknown T. pallidum lineage 🦠, reshaping our understanding of its early #evolution.
https://www.science.org/doi/10.1126/science.adw3020
#MetagenomicsMonday #SPAAM #aDNA
Check out this new paper that sheds light on the early #evolution of elephants! Straight-tusked #elephants once roamed across #Eurasia, but one lineage became stranded in Japan?! 🐘🧬 Ancient #mtDNA reveals Palaeoloxodon naumanni as an early-diverging lineage that survived in island isolation.
https://doi.org/10.1016/j.isci.2025.114156
#MetagenomicsMonday #SPAAM #aDNA #palaeogenetics #ancientDNA
It's #MetagenomicsMonday again! 🧬🧬🧬Today, we are leaving you with the new study on #HHV-6. Ancient #genomes revealed that modern HHV-6 diversity was already established centuries ago and that germline integrations stem from ancient founder events.
https://www.science.org/doi/10.1126/sciadv.adx5460
#SPAAM #aDNA #sixthdisease #roseola #pathogengenomics #ancientpathogens #viruses #evolution
📢 A gentle REMINDER from the #SPAAM Steering Committee! 🚨 The deadline for the #Blog Post #Competition is approaching (16 March) 📝. We are looking forward to receiving your submissions! :)
https://www.spaam-community.org/news/2025/11/25/blog-post-competition/
#ancientDNA #metagenomics #palaeogenomics #science #communication
SPAAM Blog Post Competition · SPAAM Community