Variants chart script has been revised. Bundling logic included a rule that was privileging Stratus XFG lineages.

Most recent #CDC dataset, updated yesterday, shows two Stratus XFG variants gaining ground against their dynastic cousins.

Meanwhile, Nimbus 1.8.1 / PQ family also gains share, lead by the XFY recombinant with XFG.5.1.

Note that, in absence of robust data from states, CDC has given up modeling historical estimates, instead giving only shares of reported sequences.

Raj's dashboard, updated six weeks ago, showed Stratus dynasty diversifying, with Stratus-Eleventy XFG.1.1 as first child, RP, approached sixth share of sequences, while XFG.14 line held below a tenth.

That said, GISAID data for the two weeks and change at the end of the most recent reporting period was dominated by paltry submissions from Nebraska (146 sequences), Wisconsin (140), Minnesota (128), Colorado (122), New York (91) and Illinois (78).

❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis

Most recent #CDC dataset, updated yesterday, shows now seven XFG lineages, including recombinant XFY. These reflect strains as broken out by CDC in recent months, together squeezing out patriarch and remaining siblings, cousins & niblings.

Meanwhile, Nimbus 1.8.1 / PQ family, is presently shown as holding out relative to XFG dynasty.

Note that, in absence of robust data from states, CDC has given up modeling historical estimates, instead giving only shares of reported sequences.

Raj's dashboard, updated six weeks ago, showed Stratus dynasty diversifying, with Stratus-Eleventy XFG.1.1 as first child, RP, approached sixth share of sequences, while XFG.14 line held below a tenth.

That said, GISAID data for the two weeks and change at the end of the most recent reporting period was dominated by paltry submissions from Nebraska (146 sequences), Wisconsin (140), Minnesota (128), Colorado (122), New York (91) and Illinois (78).

❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis

#Annoplot #dataviz has had only minor maintenance this month. Previous status found here:

https://beige.party/@beadsland/116049587908706944

Maintenance included diagnostic logging and further tweaks to bundling and color assignments, in support of dynamic legend pruning; also expansion of criteria and squishing a one-line bug for footnotes.

Root level scripting included a rough plot of incarcerated populations by census block record:

https://beige.party/@beadsland/116125341132396326

This was restricted to a single root level script, not presently reliant on Annoplot library, and thus did not appreciably increase line count. Eventually this will be transitioned over to Annoplot, in the course of prototyping new geographical charting #datavis.

Most recent #CDC dataset, updated yesterday, shows five XFG lineages, reflecting variants broken out by CDC in recent months, together squeezing out patriarch and remaining siblings, cousins & niblings.

Meanwhile, Nimbus 1.8.1 / PQ family, previously shown as in decline relative to XFG dynasty, is now shown as rapidly gaining share.

Note that, in absence of robust data from states, CDC has given up modeling historical estimates, instead giving only shares of reported sequences.

Raj's dashboard, updated two week ago, showed Stratus dynasty diversifying, with Stratus-Eleventy XFG.1.1 as first child, RP, approached sixth share of sequences, while XFG.14 line holds below a tenth.

That said, GISAID data for the two weeks and change at the end of the most recent reporting period was dominated by paltry submissions from Nebraska (146 sequences), Wisconsin (140), Minnesota (128), Colorado (122), New York (91) and Illinois (78).

❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis