Dom SommaApr 10

Interesting #10XGenomics #Flex #scRNAseq #bias

Original post: https://bsky.app/profile/did:plc:4hfcecqwahpnojy4sr7vay6j/post/3mj4ovdavhs2d

nf-coreMar 9

Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2

#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

nf-coreSep 2, 2025

Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

nf-coreJun 9, 2025

Pipeline release! nf-core/scnanoseq v1.2.0 - nf-core/scnanoseq v1.2.0 - Copper Rhinoceros!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

nf-coreMar 18, 2025

Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.1.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Release nf-core/scnanoseq v1.1.0 - Iron Alligator · nf-core/scnanoseq

Enhancements Inputs for IsoQuant are split on chromosome to allow for faster processing The read counts QC metric is now able to leverage NanoPlot counts if FastQC is skipped Added oarfish as an o...

GitHub
nf-coreMar 11, 2025

Pipeline release! nf-core/scrnaseq v4.0.0 - 4.0.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/4.0.0

#10xgenomics #10xgenomics #alevin #bustools #cellranger #kallisto #rnaseq #singlecell #starsolo #nfcore #openscience #nextflow #bioinformatics

Release 4.0.0 · nf-core/scrnaseq

What's Changed Move txp2gene to reference_genome_options in schema as it is required by kb_python and alevin by @matq007 in #434 Fix additional path splitting for txp2gene by @matq007 in #433 Add ...

GitHub
nf-coreDec 10, 2024

Pipeline release! nf-core/scrnaseq v3.0.0 - 3.0.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/3.0.0

#10xgenomics #10xgenomics #alevin #bustools #cellranger #kallisto #rnaseq #singlecell #starsolo #nfcore #openscience #nextflow #bioinformatics

Release 3.0.0 · nf-core/scrnaseq

What's Changed Update doc related to simpleaf, alevin-fry and salmon. by @an-altosian in #368 Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in #381 Fix gzip error by @esrice ...

GitHub
nf-coreOct 7, 2024

Pipeline release! nf-core/scnanoseq v1.0.0 - nf-core/scnanoseq v1.0.0 - Titanium Toad!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.0.0

#10xgenomics #long-read-sequencing #nanopore #scrna-seq #single-cell #nfcore #openscience #nextflow #bioinformatics

Release nf-core/scnanoseq v1.0.0 - Titanium Toad · nf-core/scnanoseq

v1.0.0 [2024-10-07] Initial release of nf-core/scnanoseq, created with the nf-core template.

GitHub
nf-coreAug 15, 2024

Pipeline release! nf-core/scrnaseq v2.7.1 - 2.7.1!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/2.7.1

#10x-genomics #10xgenomics #alevin #bustools #cellranger #kallisto #rna-seq #single-cell #star-solo #nfcore #openscience #nextflow #bioinformatics

Release 2.7.1 · nf-core/scrnaseq

What's Changed Fix that tests have not been executed with nf-test v0.9 (#359) Add support for 10XV4 chemistry (#348) Fix issues with predefined STAR index (#350) Update modules (#351) Fix resource...

GitHub
Jim RoseJul 23, 2024
Thinking about taking a job setting up pipelines for 10x Xenium spatial sequencing data. Anyone out there in the fediverse have experience or good resources to help me get a sense of what I’d be dealing with? #bioinformatics #Spatial #10xgenomics #genomics