nf-coreMar 11, 2025

Pipeline release! nf-core/scrnaseq v4.0.0 - 4.0.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/4.0.0

#10xgenomics #10xgenomics #alevin #bustools #cellranger #kallisto #rnaseq #singlecell #starsolo #nfcore #openscience #nextflow #bioinformatics

Release 4.0.0 · nf-core/scrnaseq

What's Changed Move txp2gene to reference_genome_options in schema as it is required by kb_python and alevin by @matq007 in #434 Fix additional path splitting for txp2gene by @matq007 in #433 Add ...

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nf-coreDec 10, 2024

Pipeline release! nf-core/scrnaseq v3.0.0 - 3.0.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/3.0.0

#10xgenomics #10xgenomics #alevin #bustools #cellranger #kallisto #rnaseq #singlecell #starsolo #nfcore #openscience #nextflow #bioinformatics

Release 3.0.0 · nf-core/scrnaseq

What's Changed Update doc related to simpleaf, alevin-fry and salmon. by @an-altosian in #368 Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in #381 Fix gzip error by @esrice ...

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nf-coreAug 15, 2024

Pipeline release! nf-core/scrnaseq v2.7.1 - 2.7.1!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/2.7.1

#10x-genomics #10xgenomics #alevin #bustools #cellranger #kallisto #rna-seq #single-cell #star-solo #nfcore #openscience #nextflow #bioinformatics

Release 2.7.1 · nf-core/scrnaseq

What's Changed Fix that tests have not been executed with nf-test v0.9 (#359) Add support for 10XV4 chemistry (#348) Fix issues with predefined STAR index (#350) Update modules (#351) Fix resource...

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nf-coreJun 25, 2024

Pipeline release! nf-core/scrnaseq v2.7.0 - 2.7.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/2.7.0

#10x-genomics #10xgenomics #alevin #bustools #cellranger #kallisto #rna-seq #single-cell #star-solo #nfcore #openscience #nextflow #bioinformatics

Release 2.7.0 · nf-core/scrnaseq

What's Changed Make it work without specifying GTF file by @grst in #322 Important! Template update for nf-core/tools v2.14.1 by @nf-core-bot in #328 Adding cellrangermulti subworkflow by @fmalmei...

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