Dayana E. Salas-Leiva πŸ––

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241 Following
736 Posts
Ph.D. in Biology. Research Associate - Waller Lab at The University of Cambridge (UK). Interested in evolutionary biology and programming. Quantum mechanics lover. #evolution #genomics #bionformatics #symbiosis #plastid #protists #parasites
ORCIDhttps://orcid.org/0000-0003-2356-3351
Google Scholarhttps://scholar.google.ca/citations?user=FjgfpYAAAAAJ&hl=en
We have some availability for Introduction to Python for Biologists 16 & 23 September. This online course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core concepts of Python including Python syntax, data structures and reading/writing files. Book here πŸ‘‡
https://training.cam.ac.uk/bioinformatics/event/5295083
Bioinformatics Training - Introduction to Python for Biologists (ONLINE LIVE TRAINING) - Mon 16 Sep 2024

I have released v0.5.0 of buttery-eel for nanopore basecalling with slow5 files

https://github.com/Psy-Fer/buttery-eel/releases/tag/v0.5.0

Release buttery-eel v0.5.0 Β· Psy-Fer/buttery-eel

What's Changed 7.4.12 dorado for v0.5.0 buttery-eel by @Psy-Fer in #47 Added more SAM tags Breaking API changes accounted for - see README Prints total reads basecalled at the end Skip queue intro...

GitHub

#Plankton mark seasons in the sea, just like leaves and flowers on land https://theconversation.com/plankton-mark-seasons-in-the-sea-just-like-leaves-and-flowers-on-land-237167

"The spring bloom of #algae is quickly followed by a rapid increase in #zooplankton – microscopic #animals that feast on the verdant #phytoplankton... Throughout summer, the abundance of phytoplankton is kept in check by zooplankton, until late summer and early autumn when storms stir up nutrients from deeper waters. These act as fertiliser for algae at the surface which burst into abundance again."

Plankton mark seasons in the sea, just like leaves and flowers on land

Plankton bloom and wither with the seasons much as plants do on land.

The Conversation
We are looking for a research technician to join the ECSO Lab to work on projects on experimental evolution and cell physiology. Please spread the word! πŸ™
https://careers.purdue.edu/job/West-Lafayette-Research-Technician-IN-47906/1057339000/
Research Technician

Research Technician

SAVE THE DATE: We are happy to announce that the Workshop on Genomics 2024 will take place on the 7-20th of January.

Save it in your calendars, and share it with those interested! More info to come soon!

https://evomics.org/2024-workshop-on-genomics/

#genomics #workshop #bioinformatics #transcriptomics #phylogenomics #popgen #savethedate #unix #r

2024 Workshop on Genomics, Cesky Krumlov - Evolution and Genomics

The 2024 Workshop on Genomics is being held 7-20th of January, 2024 in Český Krumlov, Czech Republic. This is the 13th time the Workshop of Genomics will be held in ...

Evolution and Genomics

Mastodon.social and mstdn.social are totally different servers.

They are owned and run by totally different people.

- Mastodon.social is owned by @Gargron

- Mstdn.social is owned by @stux

They just have similar-looking names, that's all.

We are hosting an SMBE satellite meeting at ASU on the "Mechanisms of Cellular Evolution" These are really fun meetings. Small, high-quality, and great for students. We have an *amazing* lineup of speakers, so take a look and please register if you are interested in evolution, biochemistry, and/or cell biology!

https://na.eventscloud.com/ereg/newreg.php?eventid=746305&eb=&ebs=*/encrypted_id/*

SMBE Satellite Meeting on Mechanisms of Cellular Evolution

The 2023 BII-MCE/SMBE Symposium on Mechanisms of Cellular Evolution is the second of an annual series of symposia focused on various topics in the fie

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"Long-read systems make it easier to assign a given sequence to a chromosome copy."
SeqCoast can help you build your pangenome and also provide annotated differences.
Find out how your strains differ from published references, predict functions, & more! https://www.nature.com/articles/d41586-023-01300-w
Every base everywhere all at once: pangenomics comes of age

Multi-genome assemblies called pangenomes can capture genetic diversity in a species, but researchers are still working out how best to build and explore them.

Holy Crap.

If confirmed, we'll have to figure out how to categorize 180,000 newly discovered viruses.

@RNA has called this the "Platinum Age of Virus Discovery"!

"Identification of #RNA viruses is currently limited to those with sequence similarity to a known #virus, such that... the 'dark matter' of the virosphere remains challenging to detect.

We developed a deep learning algorithm [which] integrates both sequence and structural information..."

https://www.biorxiv.org/content/10.1101/2023.04.18.537342v1
#virology @virology