Biello et al. present the first whole-genome analysis of Mediterranean fin whales, showing that although these form a distinct genetic cluster, they are not fully isolated from North Atlantic populations.

📷 Danny Kessler - dannykesslerphotography.com

🔗 https://doi.org/10.1093/gbe/evag084

#genome #evolution #popgen

I gave a PopGen Vienna seminar last week. I was impressed by the quality and depth of the discussions I had the all day with all the students of the program. Thank you very much. I learned so much from you, far more than I was able to help you with my limited advice #PopGen https://youtu.be/kAEsLuuLuq0?si=LUlB31eL6MruBcx5
PopGen Vienna

Nicolas Bierne - PopGen Vienna talk

YouTube
“Here we reframe the inference of coalescence times as a problem of translation between two biological languages: the sparse, observable patterns of mutation along the genome and the unobservable ancestral recombination graph that gave rise to them.” #PopGen #PopulationGenetics

RE: https://bsky.app/profile/did:plc:dg7v6uxmmotprmirq7usk3bu/post/3mj5wsiyygc2h
Any user of ANGSD on here has a trick to obtain the exact same set of sites per population when making subsets of individuals?
I can never retrieve the same sets and it is extremely annoying! This is basic popgen stuff.
The bare minimum would be to output missing data for sites impossible to analyze in this pop, so that output files can align between analyses.
(I use -sites without any filters)
#bioinformatics #popgen

Gene Flow and Habitat Heterogeneity Shape Coexistence Dynamics of Arctic Charr Morphs in Connected Lakes

We studied the phenotypic and genome-wide differentiation in Arctic charr (Salvelinus alpinus) in two Icelandic lakes: Thingvallavatn, known to harbour four distinct morphs, and a smaller downstream lake, Ulfljotsvatn. Our analyses confirm a single origin of charr polymorphism in this system, with all morphs present in both lakes.
#popgen #fish #charr #evolution

https://onlinelibrary.wiley.com/doi/10.1111/mec.70225

Second day of the 3 day workshop/conference ARGEvol on Ancestral Recombination Graphs (ARG) in Porto. A great line up of speakers and workshops on understanding and using ARGs.
#ARG #PopGen #ARGEvol

The August cover of Genome Biology and Evolution features the work of Watanabe et al., who uncover the evolutionary history of the Hondo red fox, an endemic subspecies from the Japanese Archipelago.

🔗 doi.org/10.1093/gbe/evaf152

📷 Kazuki Shibata

#genome #evolution #popgen

#PopGen New preprint of the team on the discovery of a very high rate of polymorphic duplication in a marine bivalve.

Imagine looking at the distribution of the allelic coverage fraction at heterozygous calls in an indivdual and getting this distribution 👇 😱😱😱

Four years ago, Jesse Bloom announced the recovery of SARS-CoV-2 sequences and suggested they could come from very early COVID-19 patients. Zach Hensel and I found out that Bloom's claim relied on the deliberate omission of a January 30, 2020 collection date contradicting his narrative. 🧪 #PopGen

A Critical Reexamination of Re...

100 downloads of my 'Genetic structure and relatedness of brown trout (Salmo trutta) populations in the drainage basin of the Ölfusá river, South-Western Iceland' article published in #OpenAccess journal @PeerJLife

#brownTrout #Myvatn #popgen #ecology #evolution #salmonid

https://peerj.com/articles/15985