📰 "Mechanics and thermodynamics of contractile biopolymer networks"
https://arxiv.org/abs/2405.07287 #Physics.Bio-Ph #Cond-Mat.Soft #Actomyosin #Elasticity #Mechanics
Mechanics and thermodynamics of contractile entropic biopolymer networks

Contractile biopolymer networks, such as the actomyosin meshwork of animal cells, are ubiquitous in living organisms. The active gel theory, which provides the thermodynamic framework for these materials, has been mostly used in conjunction with the assumption that the microstructure of the biopolymer network is based on rigid rods. However, experimentally, crosslinked actin network exhibits entropic elasticity. Here we combine an entropic elasticity kinetic theory, in the spirit of the Green and Tobolsky model of transiently crosslinked networks, with an active flux modelling biological activity. We determine this active flux using Onsager reciprocal relations and interpret the corresponding microscopic dynamics. We obtain a closed-form model of the macroscopic mechanical behaviour. We show how this model can be written using the framework of multiplicative strain gradient decomposition, which is convenient for the resolution of such problems.

arXiv.org

@mechanobio

A new #preprint where we derive an #activeGel #model with entropic elasticity of the #microstructure and give interpretations of the thermodynamic constraints on the dynamics of #myosin molecular motors.

#cytoskeleton #rheology #activeMatter #softMatter

Our #preprint where we derive an #activeGel #model with entropic elasticity of the #microstructure from the thermodynamic constraints on the dynamics of #myosin molecular motors is now updated!

Hopefully more readable, and with the example of a #cyst like contractile sphere.

#cytoskeleton #rheology #activeMatter #softMatter #actomyosin

And I should note that one #reviewer was super helpful, they read in depth, asked questions on things not so clear on the manuscript... and sometimes also not so clear for us, so that led us to substantial improvements!

#peerReview #scientificPublishing

Our article on the #mechanics of "active" entropic biopolymer networks [possibly including #actomyosin, this is debated experimentally] is now published in J Elas.

Compared to enthalpic models, we're able to go right from the #thermodynamics of an unbiased #molecularMotor activity (in the spirit of the model by #JacquesProst for #myosin) at the molecular scale to a network-scale model in a closed form.

And we derive a method for solving quite easily the (usually tough) #viscoelastic #liquid model that we obtain, using #deformationGradientDecomposition.

https://doi.org/10.1007/s10659-024-10102-8
(I share a paywall-free link to my followers below, but it's also on arXiv: https://arxiv.org/abs/2405.07287 and on my webpage https://liphy-annuaire.univ-grenoble-alpes.fr/pages_personnelles/jocelyn_etienne/papers.html#Jallon+Etienne.2025.1)

#cytoskeleton #cell #tissue #morphogenesis #activeMatter #livingMatter

With Pierre Recho, we're now giving a doctoral-level course on #continuumMechanics and #thermodynamics of #LivingMatter.

That's the 2nd edition, the 1st one led us to write the ⬆️ above paper ⬆️ .

Lecture notes are online, happy to have feedback!

https://liphy-annuaire.univ-grenoble-alpes.fr/pages_personnelles/jocelyn_etienne/LivingMatterCourse/

Continuum mechanics and thermodynamics of living matter - 2025