Systems Engineer II

Life Science Network
Well it’s the final day of what has been pretty much my ideal meeting! JCS Imaging Cell Dynamics has been an absolute blast. Fantastic organisation by @Co_Biologists in an amazing venue in the hills of Catalonia. #microscopy #cellbiology

👃🧬 Scientists are using cryo-electron #microscopy to visualize how scent #molecules bind to receptors in the nose.

The structural details help explain how the #brain distinguishes between thousands of different odors based on molecular shape and #chemistry. The findings provide a clearer understanding of the biological process that allows us to experience the world through smell.

👉 https://www.chemistryworld.com/features/the-molecular-mystery-of-how-we-smell/4023405.article

#biology #science #research #education #nature

The molecular mystery of how we smell

Despite being one of our key senses, the molecular mechanisms of smell remain poorly understood. Mason Wakely sniffs out the competing theories of what may be happening in our noses

Chemistry World
A non-contact technique that utilizes laser-induced thermo-viscous fluid flows to rotate delicate microscopic samples in all three spatial dimensions.
#Microscopy #OpticalImaging #FluidDynamics #Biophysics #Microrobotics #Microtechnology #sflorg
https://www.sflorg.com/2026/05/phy05122601.html
3D Microscopy: Laser Rotates Samples Contact-Free

KIT researchers develop a laser-based technique to rotate delicate cell samples in 3D without physical contact, advancing medical imaging and robotics

New Paper Day!
A hyper specific investigation of how Ameloblasts get incorporated into enamel as it forms, and what this does.

Enamel Tubules and Spindles: Enter and Exit the Amelocyte | Calcified Tissue International | Springer Nature Link
https://link.springer.com/article/10.1007/s00223-026-01522-w

#Teeth #anatomy #microscopy

Enamel Tubules and Spindles: Enter and Exit the Amelocyte - Calcified Tissue International

By the commonly accepted rules of nomenclature, cells forming hard tissue which become incorporated within the inter- and extra-cellular tissue mass which they secrete are called ‘-cytes’: the spaces in which these cells sit are called lacunae. Hence, osteoblasts become osteocytes in osteocytic lacunae, chondroblasts become chondrocytes, cementoblasts cementocytes, even odontoblasts become odontocytes in some mammalian species. We provide evidence that enamel spindles are cell bodies of ameloblasts which have become entrapped and buried in the enamel matrix produced by the surrounding cells, to produce amelocytic lacunae: it is no life for a cell in a rigid, dense and dead tissue, and we do not suppose that amelocytes live once they are set on that route. Spindles, normally only found at the enamel-dentine junction, are absent when the enamel at the junction is free of prisms, i.e., the ameloblasts had no Tomes’ processes. Spindles have an organic content, the amelocyte residue which can be stained - and removed by bleach, after which the spindle space no longer stains. Spindles are extensions of enamel tubules which result from the extension of a fine ameloblastic process [from the major Tomes’ process] which unites with an odontoblast process. In marsupial mammals, the spindle-like ends of the enamel tubules are commonly located well within the enamel. Spindles/amelocytes may form at the neonatal line in human deciduous teeth in cases of severe neonatal stress, and these features simply represent encapsulation of moribund ameloblasts. The frequency of spindles at the enamel dentine junction is greater in cases where the tooth germ is severely deformed by growth pressure from the forming root of a neighbouring tooth.

SpringerLink

Just shipped v0.1.0 of CellSeg — an open-source Android app that runs Cellpose cell segmentation on-device

Free, MIT-licensed, no ads, no tracking. ~14 MB cyto3 ONNX model, runs fully offline after first download. Optional Cellpose-SAM cloud fallback via Hugging Face for harder cases

Written up the launch with the architecture, the licensing chapter, and an honest list of what v0.1.0 isn't yet:

https://kemal.yaylali.uk/cellseg-v0-1-0-is-out/

#bioinformatics #microscopy #cellpose #android #buildinpublic #opensource

CellSeg v0.1.0 is out

Three months ago I started building an Android app to count cells. Today the first public build is up, and I'd like to introduce it properly. It's called CellSeg, and it does one stubborn small thing: it lets a bench scientist take a picture of a microscopy sample with their phone and get a cell count out of it in a few seconds, on the device, with no laptop and no cloud round-trip in the way. You can install it from cellseg.yaylali.uk. It's an open-source sideload APK — not on the Play […]

https://kemal.yaylali.uk/cellseg-v0-1-0-is-out/

The bench problem that wouldn’t go away

CellSeg There's a thing that happens in a tissue culture lab that I've never quite gotten used to, even after years of doing it. You pull a sample from a flask or a bioreactor, you load it onto a counting chamber, you put your eye to the microscope, and then you spend the next several minutes squinting at a grid and clicking a tally counter. If you're being honest about it, the count you write down is half measurement, half judgement call. Were those two cells one cell that was dividing? Was […]

https://kemal.yaylali.uk/the-bench-problem-that-wouldnt-go-away/

One of the reasons why I love being a microscopist working in #immunology 💜🔬🎨 This beauty is a #microscopy image of human gingival tissue from a periodontitis patient we stained using our multiplex technique. One of those shots was chosen for the new #bmbf exhibition traveling through Germany, Austria and Poland via the MS Wissenschaft - a floating science center. Opening is tomorrow - Check it out!

#sciencemastodon #science

https://www.drfz.de/neuigkeiten/faszinierende-gewebelandschaften-auf-kreuzfahrt/
https://ms-wissenschaft.de/de/besuch/tour/