Are you at your witsโ end when it comes to making your #BioImage data available and archiving it? Fortunately, youโre not alone!
The poster, "Help Desk for Community Support in Bioimage Research Data Management," presented at the 2026 @GerBI Community Meeting by @nfdi4bioimage data stewards Cornelia Wetzker, Maximilian Mรผller, and Vanessa Fuchs, outlines the help desk's services and strategies to make bioimage data more #FAIR throughout the research data life cycle.
๐#MeetOurDataStewards: Cornelia Wetzker
Weโre excited to introduce Cornelia Wetzker, @nfdi4bioimage as our featured member this month. Cornelia is a trained life scientist and microscopy specialist and now supports scientists in bioimage data management. She can help you with requests regarding research data management in general, #bioimage data handling and management e.g. in the platform #OMERO and publication in public repositories.
๐ nfdi4bioimage.de/about-us/data-stewardship-team/wetzker/
๐#MeetOurDataStewards #3: Riccardo Massei
Riccardo's first project as a Data Steward at @nfdi4bioimage involved managing and publishing an HCS zebrafish dataset. ๐
Using the #VAST Bio-Image platform and #OMERO, he created a workflow to structure and annotate the data, which is now shareable via the #BioImage Archive. This strengthens open science and #FAIR data principles. ๐
๐ Take a closer look at Riccardos' work as a Data Steward: https://nfdi4bioimage.de/news/news-details/meet-our-data-stewards-3-riccardo-massei/
To wrap this up: Both tools are easy to test. I highly recommend trying them on your own data to see what works best for your use case.
Iโll include #CellSeg3D in our next #Napari #bioimage analysis course (https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/). Curious what impressions and feedback the students will share. ๐งช๐
What I really like about @napari is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for (bio) #imageanalysis! ๐
This post demonstrates the NFDI4BIOIMAGE Knowledge Graph (N4BIKG). Many aspects of this project are still very much in the flow including a consensus on which ontologies and terms to employ, how to define various namespaces and much more. These issues left aside, I focus on two components: First, the "core" KG contains information about the NFDI4BIOIMAGE consortium, it's participating institutions and people working in or for NFDI4BIOIMAGE, publications (via zenodo records submitted to the NFDI4BIOIMAGE community) and some more.
Looking forward to the Helmholtz Imaging Conference in Potsdam, June 25โ27!
@haesleinhuepf (ScaDS.AI/NFDI4BIOIMAGE) will give a keynote on #LLMs for #bioimage #data science, and Riccardo Massei (#UFZ) will contribute to the pre-conference workshop on #zebrafish image and video analysis on June 25. Don't miss it.
๐ Register here: https://events.hifis.net/event/2061/overview
If you would like to attend a microscopy or bioimage analysis training course in the next 6 months but donโt have funding, check out our Microscopy Training Grant from @J_Cell_Sci and @focalplane_jcs.
Next deadline: 6 June 2025
https://www.biologists.com/grants/jcs-focalplane-training-grants/
#Microscopy #BioimageAnalysis #Bioimage #Biology #Training #Grants
About JCS-FocalPlane Training Grants JCS-FocalPlane Training Grants are aimed at early-career researchers, working in an area covered by JCS, who would like to attend a microscopy training course. These training grants can be used to cover the registration fees, accommodation and/or travel costs associated with attending such a course and are designed to support those[...] Read More
Some time ago @devTLB and I announced that we work on a review about #rstats packages for #bioimage informatics. We think it is fairly complete now.
We would be happy to get some feedback before we submit it.
Here is the link to the draft:
[Update: Copy on Codeberg]
https://codeberg.org/devSJR/Bioimage/src/branch/main/RImageReview.pdf
Exiting news! ๐ฅ
We'll be attending the Helmholtz Imaging Conference in Potsdam, June 25-27.
Our @nfdi4bioimage Task Area Leader @haesleinhuepf from @unileipzig will present a keynote on "Large Language Models for #BioImage Data Science". In addition, Riccardo Massei from @ufz will offer a workshop on "Advances and challenges in zebrafish image and video analysis".
We are looking forward to meeting you there and to the exciting program!
๐ Registration: https://events.hifis.net/event/2061/overview
Image: Sven Velten, Lars Bocklage, Ilya Sergeev, DESY & Ralf Rรถhlsberger, HI Jena The Helmholtz Imaging Conference 2025 is set to take place, and we are thrilled to invite you! This year, weโre bringing imaging enthusiasts to Potsdam on June 25-27, and you wonโt want to miss it! This dynamic event is open to all scientists. If youโre involved in imaging research or using imaging techniques or images in your research, this is your conference! Get ready for: ๐ Inspiring keynotes ๐ฌ Dynamic...
A gentle reminder that the deadline for registration to the True Image Deconvolution, Restoration, and Analysis Workshop is today. The workshop is virtual and free of charge.
#Bioimage #Analysis #Microscopy #Euro-Bioimaging #PSF
NFDI4BIOIMAGE
Fabrizio Musacchio
c4r510
@Co_Biologists
devSJR 
Nadia Halidi