Mastodawn

KODAMA goes spatial
https://doi.org/10.1101/2025.05.28.656544
#spatialtranscriptomics #visium #visiumhd

Want a sneak peek or to try it on your own data? Try EnrichMap https://enrichmap.readthedocs.io/en/latest/
#SpatialTranscriptomics #ComputationalBiology #EnrichMap #spatialomics

Welcome to EnrichMap’s documentation! — EnrichMap

Loïc A. Royer 💻🔬🧪Apr 15

🧬🔬🧪 We are seeking a Scientist to push the limits of spatial transcriptomics in zebrafish! Come join us! #MolBio #SpatialTranscriptomics #DevelopmentalBiology #ScienceJobs 🧫🐟🔍 job-boards.greenhouse.io/chanzuckerbe...

Scientist, Spatial Molecular C...

Bluesky

Bluesky Social

Haojia Wu Mar 5

Decoding cell–cell communication using spatial transcriptomics

#spatialtranscriptomics #omics #ccc
https://www.nature.com/articles/s41576-025-00824-3

Decoding cell–cell communication using spatial transcriptomics - Nature Reviews Genetics

In this Tools of the Trade article, Ankit Agrawal introduces the computational framework NiCo (Niche Covariation), which integrates spatial transcriptomics with single-cell RNA-sequencing data to study cell–cell communication.

Nature

EMBL Events Feb 28

📣 Listen up: you only have a few more days to apply for #EMBOSpatialOmics!

Would you like to get a comprehensive introduction to the various methods of spatial-omics and in particular those of multiplex immunofluorescence and spatial transcriptomics?

Then apply for this hands-on EMBO Practical Course by 10 March ✍️

🌍 EMBL Heidelberg
📅 15 – 20 June 2025
💻 https://s.embl.org/iso25-01-ma

#spatialtranscriptomics #microscopy #imageanalysis #spatialbiology #spatialomics

Imaging-based spatial-omics

Haojia Wu Dec 27

Spatiotemporal single-cell roadmap of human skin wound healing
#scRNA-seq

#spatialtranscriptomics

#visium

#RNAScope
https://www.cell.com/cell-stem-cell/fulltext/S1934-5909(24)00412-0?dgcid=raven_jbs_aip_email

Benjamin S-B

Sep 17, 2024

#job alert: junior/mid-career PI opportunities in cancer research @ Oxford university: https://www.ludwig.ox.ac.uk/news/vacancies-assistant-or-associate-professor-level-cancer-researchers

Areas we're looking for:
#epigenetics #chromatin #epitranscriptomics #RNA #myeloidCells #spatialTranscriptomics

Please boost for visibility! @academicchatter #hiring

Vacancies: assistant or associate professor level cancer researchers

The University of Oxford and the Ludwig Institute for Cancer Research are adding to our growing group of cancer researchers. We are seeking individuals at early to mid-stage career stages (Assistant or Associate Professor level).

Thiago Carvalho Jun 6, 2024

Tools (#preprint from 10x Genomics).
'Here, we introduce Visium HD Spatial Gene Expression (“Visium HD”) and demonstrate its use as a discovery platform for profiling CRC in multiple patients using FFPE tissue blocks. Visium HD slides provide a dramatically increased oligonucleotide barcode density over the Visium v2 slides (11,000,000 continuous features in a 6.5 mm Visium HD capture area, compared to 5,000 features with gaps between them in a 6.5 mm Visium v2 capture area). The single cell scale resolution of Visium HD allowed us to map distinct populations of immune cells, specifically macrophages and T cells, and evaluate differential gene expression at the tumor boundary to explore the potential contribution of these immune cell populations in the TME.'
#Immunology #Immunotherapy #SpatialTranscriptomics
https://www.biorxiv.org/content/10.1101/2024.06.04.597233v1

Tim Downing Sep 28, 2023

Some really great talks and discussions today on advances in virus-livestock omics at the #Turing institute, who kindly supported the event. Talks include those by Ge Wu and Marie Di Placido (pictures) from the #Pirbright Institute.

Great to have input from the #BBSRC and #SFTC #Harttree Centre too.

Looking forward to new adventures in this area...

#livestock #virus #genomics #antibody #genome #mutation #pangenome #omics #transcriptomics #spatialtranscriptomics #fmdv