CSBJNov 10

🧬 How can AI bridge the gap between histology and spatial transcriptomics?

🔗 SegDecon bridges histology and transcriptomics through AI-based nuclei segmentation and image-informed spatial deconvolution. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.041

📚 CSBJ: https://www.csbj.org/

#SpatialTranscriptomics #Histology #Genomics #SystemsBiology #NucleiSegmentation #AI #CellBiology #TissueBiology #Bioimaging

GHGANov 6

Is spatial transcriptomics data preprocessing giving you a headache? You're not alone! 🤯
Join our webinar designed for new researchers to simplify the complex world of image-based spatial omics. We'll walk through the practical workflow step-by-step, from initial cell segmentation to cleaning up your data.
Get the foundational skills you need. 📅 Sign up here: https://t1p.de/lqbg1

#Transcriptomics #SpatialTranscriptomics #Omics #DataScience #ResearchWebinar #GHGA #ELIXIR #deNBI

Yonhap Infomax NewsOct 29
Celltrion has entered a joint R&D agreement with Portrai to leverage spatial transcriptomics and AI for new drug discovery, securing exclusive rights to up to 10 targets in a deal worth up to $87.75 million, with additional royalties upon commercialization.
#YonhapInfomax #Celltrion #Portrai #SpatialTranscriptomics #DrugDiscovery #AITechnology #Economics #FinancialMarkets #Banking #Securities #Bonds #StockMarket
https://en.infomaxai.com/news/articleView.html?idxno=87894
Celltrion Signs Joint Drug Discovery R&D Agreement with Portrai

Celltrion has entered a joint R&D agreement with Portrai to leverage spatial transcriptomics and AI for new drug discovery, securing exclusive rights to up to 10 targets in a deal worth up to $87.75 million, with additional royalties upon commercialization.

Yonhap Infomax
Stefano CacciatoreJun 3
KODAMA goes spatial
https://doi.org/10.1101/2025.05.28.656544
#spatialtranscriptomics #visium #visiumhd
Show threadCenk CelikJun 2
Want a sneak peek or to try it on your own data? Try EnrichMap https://enrichmap.readthedocs.io/en/latest/
#SpatialTranscriptomics #ComputationalBiology #EnrichMap #spatialomics
Welcome to EnrichMap’s documentation! — EnrichMap

Loïc A. Royer 💻🔬🧪Apr 15
🧬🔬🧪 We are seeking a Scientist to push the limits of spatial transcriptomics in zebrafish! Come join us! #MolBio #SpatialTranscriptomics #DevelopmentalBiology #ScienceJobs 🧫🐟🔍 job-boards.greenhouse.io/chanzuckerbe...

Scientist, Spatial Molecular C...
Bluesky

Bluesky Social
Haojia WuMar 5

Decoding cell–cell communication using spatial transcriptomics

#spatialtranscriptomics #omics #ccc
https://www.nature.com/articles/s41576-025-00824-3

Decoding cell–cell communication using spatial transcriptomics - Nature Reviews Genetics

In this Tools of the Trade article, Ankit Agrawal introduces the computational framework NiCo (Niche Covariation), which integrates spatial transcriptomics with single-cell RNA-sequencing data to study cell–cell communication.

Nature
EMBL EventsFeb 28

📣 Listen up: you only have a few more days to apply for #EMBOSpatialOmics!

Would you like to get a comprehensive introduction to the various methods of spatial-omics and in particular those of multiplex immunofluorescence and spatial transcriptomics?

Then apply for this hands-on EMBO Practical Course by 10 March ✍️

🌍 EMBL Heidelberg
📅 15 – 20 June 2025
💻 https://s.embl.org/iso25-01-ma

#spatialtranscriptomics #microscopy #imageanalysis #spatialbiology #spatialomics

Imaging-based spatial-omics

Haojia WuDec 27, 2024
Spatiotemporal single-cell roadmap of human skin wound healing
#scRNA-seq

#spatialtranscriptomics

#visium

#RNAScope
https://www.cell.com/cell-stem-cell/fulltext/S1934-5909(24)00412-0?dgcid=raven_jbs_aip_email
Benjamin S-B Sep 17, 2024

#job alert: junior/mid-career PI opportunities in cancer research @ Oxford university: https://www.ludwig.ox.ac.uk/news/vacancies-assistant-or-associate-professor-level-cancer-researchers

Areas we're looking for:
#epigenetics #chromatin #epitranscriptomics #RNA #myeloidCells #spatialTranscriptomics

Please boost for visibility! @academicchatter #hiring

Vacancies: assistant or associate professor level cancer researchers

The University of Oxford and the Ludwig Institute for Cancer Research are adding to our growing group of cancer researchers. We are seeking individuals at early to mid-stage career stages (Assistant or Associate Professor level).