Pipeline release! nf-core/pairgenomealign v2.2.2 - nf-core/pairgenomealign v2.2.2 – Juicy!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.2

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.2.1 - nf-core/pairgenomealign v2.2.1 – C’est quoi ça?!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.1

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.2.0 - nf-core/pairgenomealign v2.2.0 – Chagara ponzu!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v2.2.0 – Chagara ponzu · nf-core/pairgenomealign

v2.2.0 "Chagara ponzu" - [May 29th 2025] Added Support for export to BAM and CRAM formats (#31) (#43). SAM/BAM/CRAM alignments files are sorted and their header features all sequences of the targe...

GitHub

Pipeline release! nf-core/pairgenomealign v2.1.0 - nf-core/pairgenomealign v2.1.0 – Goya champuru!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.1.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.0.0 - nf-core/pairgenomealign v2.0.0 – Naga imo!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.0.0

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v2.0.0 – Naga imo · nf-core/pairgenomealign

v2.0.0 "Naga imo" - [February 5th, 2025] Breaking changes The LAST software was updated and it has new defaults for some of its parameters. The alignments ran with this pipeline will not be identi...

GitHub

Pipeline release! nf-core/pairgenomealign v1.1.1 - nf-core/pairgenomealign v1.1.1 – Kani nabe!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.1.1

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v1.1.1 – Kani nabe · nf-core/pairgenomealign

This release brings the pipeline to the standards of Nextflow 24.10.1 and nf-core 3.1.0. No changes were made to the alignment process.

GitHub

Pipeline release! nf-core/pairgenomealign v1.1.0 - nf-core/pairgenomealign v1.1.0 – Nattou Maki!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.1.0

#comparative-genomics #dot-plot #genomics #last #pairwise-alignment #synteny #whole-genome-alignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v1.1.0 – Nattou Maki · nf-core/pairgenomealign

Added a new softmask parameter, to optionally keep original softmasking.

GitHub

Pipeline release! nf-core/pairgenomealign v1.0.0 - nf-core/pairgenomealign v1.0.0 – Sweet Potato!

Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/1.0.0

#comparative-genomics #dot-plot #genomics #last #pairwise-alignment #synteny #whole-genome-alignment #nfcore #openscience #nextflow #bioinformatics

Release nf-core/pairgenomealign v1.0.0 – Sweet Potato · nf-core/pairgenomealign

Initial release. Thanks again to my colleagues, collaborators, and the nf-core community. nf-core/pairgenomealign is a bioinformatics pipeline that aligns one or more query genomes to a target gen...

GitHub
Reconstructing the #TreeOfLife is a central goal in biology. @jlsteenwyk & Nicole King discuss the use of #synteny for reconstructing the ToL and propose a roadmap for conducting rigorous & accurate synteny-based #phylogenomic analysis #PLOSBiology https://plos.io/3Vavczo
The promise and pitfalls of synteny in phylogenomics

Reconstructing the tree of life is a central goal in biology. This Essay discusses the use of synteny, an emerging phylogenomic marker, for reconstructing the tree of life and propose a roadmap for conducting rigorous and accurate synteny-based phylogenomic analysis.

A window into plant evolution: The unusual genetic journey of lycophytes

An international team of researchers has uncovered a remarkable genetic phenomenon in lycophytes, which are similar to ferns and among the oldest land plants. Their study, recently published in the journal PNAS, reveals that these plants have maintained a consistent genetic structure for over 350 million years, a significant deviation from the norm in plant genetics.

Phys.org