Mastodawn

Daniel Wendscheck Mar 11, 2023

Martin Steinegger Mar 11, 2023

Next-generation AI protein structure predictors have generated hundreds of millions of protein structures. We clustered 220 million #AlphaFold structures from UniProt using our novel Foldseek structure clustering algorithm and identified 2.27 million clusters, which we analyzed by function, annotation, domains, and evolution. It's a collaboration with the Pedro Beltrao lab. Check out the paper, data and method here:
📄 https://www.biorxiv.org/content/10.1101/2023.03.09.531927v1
💾 https://cluster.foldseek.com

Daniel Wendscheck Mar 11, 2023

warscheidlab Mar 10, 2023

#Helloworld We are the lab of Bettina Warscheid using #massspec #proteomics to investigate cellular signalling and its structural implications. We just moved from #Freiburg to #Wuerzburg and are setting up our new #lab at the moment. Looking forward to talking a bit more #science on mastodon. Toots by @aretaon and @dwendscheck.

Daniel Wendscheck Jan 22, 2023

Glenn Fleishman Jan 22, 2023

Twitter has given us all the insight we ever needed into the phrase “if you’re not paying for the product, you ARE the product.”

Daniel Wendscheck Jan 21, 2023

Phil Wilmarth Jan 19, 2023

#TeamMassSpec on Mass2don seems like a ghost town. Are you:

Still here

90.5%

Sadly back on that bird site

9.5%

Poll ended at Jan 22, 2023 at 1:52am.

Daniel Wendscheck Jan 19, 2023

Sean Heber Jan 18, 2023

Maybe the real social network is the friends we convinced to move to Mastodon along the way.

Daniel Wendscheck Jan 17, 2023

Ever wondered what these #peroxisomes are about I'm dealing with in my #PhD
@unifreiburg
?
The Maya Schuldiner Lab
@WeizmannScience
together with
@MuzaProductions

produced a stunning 2 min video using #blender3d.
#organelle
#sciart
#scicomm

https://www.youtube.com/watch?v=HZZ1h6UK53g

The Organelle They Never Told You About

YouTube

Daniel Wendscheck Jan 10, 2023

Scheltema LAB Jan 10, 2023

Happy new year from the Symposium on Structural Proteomics!

Next speaker on the list! Panagiotis Kastritis will talk about his efforts on integrating mass spec data with EM!

Tickets available at:
https://ssp2022.com
or
https://www.eventbrite.nl/e/symposium-of-structural-proteomics-april-24-25-2023-tickets-385580079397

Symposium for Structural Proteomics 2022 – ssp2022

Daniel Wendscheck Jan 4, 2023

Brian Hampton Jan 4, 2023

@wfondrie and colleagues have done one better than Google Translate. Always a joy to read your papers!
#MachineLearning, #Proteomics, #TeamMassSpec, #Casanovo

https://www.biorxiv.org/content/10.1101/2023.01.03.522621v1 "Sequence-to-sequence translation from mass spectra to peptides with a transformer model"

"... like translating a sequence of words in a sentence from one language to another, Casanovo translates a sequence of peaks in an MS/MS spectrum into a sequence of amino acids of the generating peptide."

Daniel Wendscheck Dec 21, 2022

TeelaResists Dec 20, 2022

A statue honoring Henrietta Lacks whose whose cells resulted in countless medical breakthroughs will be built in her birthplace Roanoke #Virginia

The statue replaces Gen Robert E Lee

#BlackMastodon
#tuesdayvibe 😻

https://abcnews.go.com/US/henrietta-lacks-hometown-build-statue-robert-lee-sculpture/story?id=95541987&fbclid=IwAR1gu8U2lBELLPxSTng6D_V0jTUkGNDh00K7OOR9Is-WwaRQCzePVqt8WMc

Henrietta Lacks' hometown will build statue of her where Robert E. Lee sculpture once stood

Lacks' "HeLa" cells have led to numerous medical breakthroughs.

ABC News

Daniel Wendscheck Dec 20, 2022

Björn Brembs Dec 20, 2022

Hey, @elonmusk @Twitter @twittersupport or whoever is in charge: this was a service to a scientific community. If you goal is to drive away scientists from Twitter, you just got a step closer.
#Drosophila