Mastodawn

Daniel Wendscheck Mar 11, 2023

Martin Steinegger Mar 11, 2023

Next-generation AI protein structure predictors have generated hundreds of millions of protein structures. We clustered 220 million #AlphaFold structures from UniProt using our novel Foldseek structure clustering algorithm and identified 2.27 million clusters, which we analyzed by function, annotation, domains, and evolution. It's a collaboration with the Pedro Beltrao lab. Check out the paper, data and method here:
📄 https://www.biorxiv.org/content/10.1101/2023.03.09.531927v1
💾 https://cluster.foldseek.com

Daniel Wendscheck Mar 11, 2023

warscheidlab Mar 10, 2023

#Helloworld We are the lab of Bettina Warscheid using #massspec #proteomics to investigate cellular signalling and its structural implications. We just moved from #Freiburg to #Wuerzburg and are setting up our new #lab at the moment. Looking forward to talking a bit more #science on mastodon. Toots by @aretaon and @dwendscheck.

Daniel Wendscheck Jan 22, 2023

Glenn Fleishman Jan 22, 2023

Twitter has given us all the insight we ever needed into the phrase “if you’re not paying for the product, you ARE the product.”

Daniel Wendscheck Jan 21, 2023

Phil Wilmarth Jan 19, 2023

#TeamMassSpec on Mass2don seems like a ghost town. Are you:

Still here

90.5%

Sadly back on that bird site

9.5%

Poll ended at Jan 22, 2023 at 1:52am.

Daniel Wendscheck Jan 20, 2023

Edu Jan 19, 2023

RT @[email protected]

In 2018 I taught computational biology for the first time. Online resources (slides, etc) were very helpful and I vowed to post my material once it had settled into a more or less solidified state. I’ve now posted lectures and Python labs (ipynb) to github https://github.com/fayjustin/computational_biology

🐦🔗: https://twitter.com/justinfay/status/1615751318286598145

GitHub - fayjustin/computational_biology: course material

course material. Contribute to fayjustin/computational_biology development by creating an account on GitHub.

GitHub

Daniel Wendscheck Jan 19, 2023

Sean Heber Jan 18, 2023

Maybe the real social network is the friends we convinced to move to Mastodon along the way.

Daniel Wendscheck Jan 17, 2023

Ever wondered what these #peroxisomes are about I'm dealing with in my #PhD
@unifreiburg
?
The Maya Schuldiner Lab
@WeizmannScience
together with
@MuzaProductions

produced a stunning 2 min video using #blender3d.
#organelle
#sciart
#scicomm

https://www.youtube.com/watch?v=HZZ1h6UK53g

The Organelle They Never Told You About

YouTube

Daniel Wendscheck Jan 12, 2023

Edu Jan 12, 2023

RT @[email protected]

Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline | https://buff.ly/3kbOJ2d #proteomics

🐦🔗: https://twitter.com/PastelBio/status/1613475997906509824

Daniel Wendscheck Jan 10, 2023

Scheltema LAB Jan 10, 2023

Happy new year from the Symposium on Structural Proteomics!

Next speaker on the list! Panagiotis Kastritis will talk about his efforts on integrating mass spec data with EM!

Tickets available at:
https://ssp2022.com
or
https://www.eventbrite.nl/e/symposium-of-structural-proteomics-april-24-25-2023-tickets-385580079397

Symposium for Structural Proteomics 2022 – ssp2022

Daniel Wendscheck Jan 4, 2023

Brian Hampton Jan 4, 2023

@wfondrie and colleagues have done one better than Google Translate. Always a joy to read your papers!
#MachineLearning, #Proteomics, #TeamMassSpec, #Casanovo

https://www.biorxiv.org/content/10.1101/2023.01.03.522621v1 "Sequence-to-sequence translation from mass spectra to peptides with a transformer model"

"... like translating a sequence of words in a sentence from one language to another, Casanovo translates a sequence of peaks in an MS/MS spectrum into a sequence of amino acids of the generating peptide."