de.NBI & ELIXIR Germany

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The de.NBI network provides bioinformatics services and comprehensive compute resources to researchers in the life sciences and biomedicine in Germany and Europe. Since August 2016 the German Node of ELIXIR, ELIXIR Germany, is run by de.NBI partners.
๐ŸŒ How can we close the infrastructure gap in exposome research?
Environmental exposures shape our health, but data remains fragmented. Join our upcoming seminar to discover CLUESโ€”a geospatial framework that systematically links open-access environmental data to individual health cohorts in a privacy-compliant way.
๐Ÿ“… June 24, 2026 | 10:00 CEST (Online)
๐Ÿ”— https://www.denbi.de/training-courses-2026/2096-integrating-environmental-and-health-data-with-clues
#Exposome #HealthData #EnvironmentalHealth #CLUES #DataScience #Webinar

๐ŸŽจ Tired of manually realigning text boxes in PowerPoint for the 17th time?

Join our next Training Clinic on June 25th (13:00-14:00 CEST)! We are exploring workflows where animations & diagrams are treated as source code.

No cinematic masterpieces promisedโ€”just a practical workflow for scientists and educators who want better teaching materials.

๐Ÿ’ป Online | Free
๐ŸŽฏ Target: Current & aspiring STEM trainers

Register here: ๐Ÿ‘‡
https://www.denbi.de/training-courses-2026/2091-training-clinic-june-2026

#Bioinformatics #EdTech #MotionCanvas

๐Ÿ”ฌ LIFS Lipidomics Workshop 2026 ๐Ÿ”ฌ

Ready to elevate your lipidomics data analysis? Join us for this comprehensive, hands-on training course hosted in-person at the 11th Lipidomics Forum in Borstel!

๐Ÿ“… Date: Monday, September 7th, 2026
โฐ Time: 10:00 โ€“ 16:30 CEST
๐Ÿ“ Location: On-site (Borstel, DE)
๐Ÿ’ถ Fee: 20 โ‚ฌ

๐Ÿ’ก What You Will Learn
- Shotgun Lipidomics
- Targeted LC-MS
- FAIR Data & Analytics

๐Ÿ“ Registration:
https://www.denbi.de/training-courses-2026/2092-lifs-training-workshop-lipidomics-forum-2026

#Lipidomics #MassSpectrometry #Bioinformatics #FAIRdata #LCMS

Service of the week:
Looking for a trusted home for your plant research data? ๐ŸŒฟ

e!DAL-PGP offers free, long-term, FAIR-compliant storage for multi-omics and phenotyping datasets.

๐Ÿš€ Free for academic use.
๐Ÿ“ Hosted by @leibnizipk

โžก๏ธ https://edal.ipk-gatersleben.de/

#PlantResearch #Phenotyping #Bioinformatics #eDAL #RDM #DataManagement

๐Ÿ‡ฎ๐Ÿ‡น Greetings from Rome!

Last week, the HUPO-PSI Spring Meeting at the CNR brought together the global community to advance open data standards for #proteomics and #metabolomics. ๐Ÿงฌ

@deNBI was thrilled to be part of the discussions! We organized a successful workshop Metabolomics & MS Data Standards fostering collaboration across the field. ๐Ÿค

Standardization is key to reproducible science! ๐Ÿš€

#HUPOPSI #OpenData #Bioinformatics #deNBI #Metabolomics #MassSpec #FAIRdata #ScienceEvents

๐Ÿš€ Registration is OPEN for the de.NBI Summer School 2026 - Bioinformatics for Proteomics."! ๐Ÿงฌ

๐Ÿ™Œ Fully Supported:
We are happy to share that there are no fees for the event. To fully support the stay of the selected candidates, we will provide accommodation and local travel tickets within Bochum. Furthermore, meals and social events are included in the program.

๐Ÿ“… 7-11 September
๐Ÿ“ Bochum, Germany
๐Ÿ”— Apply here: https://www.denbi.de/training-courses-2026/2075-de-nbi-summer-school-2026-bioinformatics-for-proteomics

#Bioinformatics #Proteomics #SummerSchool -MS

๐Ÿงฌ Join us in Heidelberg to master the art of building biomedical knowledge graphs! ๐Ÿงช๐Ÿ’ป

๐Ÿ“… 15-19 June 2026
๐Ÿ“ Im Neuenheimer Feld 205, Heidelberg

What youโ€™ll learn:
- Create KGs from your own data using BioCypher.
- Scale complex projects with Generative AI and agentic automation.

Don't miss out on this deep dive into ontologies, data harmonization, and machine-readable knowledge! ๐Ÿš€

https://www.denbi.de/training-courses-2026/2089-establishing-a-knowledge-graph-community-in-biomedical-science

#Bioinformatics #KnowledgeGraph #OpenScience #GenerativeAI #Python #MultiOmics

๐Ÿ”ฌ Revolutionizing Proteomics Workflows ๐Ÿงฌ

Consistency is key in research. quantms provides an automated, high-performance workflow for large-scale peptide and protein quantification, ensuring reproducible results across your entire project.

Why choose quantms?
๐Ÿ”น Scalable: Built for large datasets.
๐Ÿ”น Consistent: Standardized processing for reliable quantification.
๐Ÿ”น Accessible: Free for the academic life science community!

๐Ÿ”— https://quantms.org/

#Proteomics #MS #Bioinformatics #LifeSciences

๐ŸŒฟ E-PAN โ€“ Enhancing Pan-Genome Analysis in Plants ๐Ÿงฌ

Standardizing pan-genome data is a major challenge in biodiversity and food security. Join our upcoming session to explore the outcomes of the ELIXIR-funded E-PAN initiative!

What we will cover:
โœ… Defining QC standards for pan-genomes
โœ… Harmonized reporting & structural variant detection
โœ… Practical visualization solutions

๐Ÿ“… Date: Monday, 18 May 2026
๐Ÿ•‘ Time: 14:00 โ€“ 16:00 CEST
๐Ÿ“ Location: Online (Zoom)

https://www.denbi.de/training-courses-2026/2088-enhancing-pan-genome-analysis-in-plants

๐Ÿงฌ Proteomics Workshop in Helsinki! ๐Ÿ‡ซ๐Ÿ‡ฎ

Join us on April 30th at the University of Helsinki for an intensive day of mass spectrometry analysis. From LC-MS/MS basics to advanced DDA/DIA quantitation using OpenMS and OpenDIAKiosk.

๐Ÿ“ Meilahti Campus, Biomedicum 1, Sali 3
๐Ÿ•˜ 30th April - 09:00 - 17:00
๐Ÿ’ป Note: This is a hands-on courseโ€”please bring your laptop!
๐Ÿ”— https://www.denbi.de/training-courses-2026/2086-ms-analysis-with-openms-and-opendiakiosk

#Proteomics #Bioinformatics #MassSpec #OpenMS #Helsinki #UniHelsinki #Science #deNBI