Pierre Lindenbaum"GWAS SVatalog: a visualization tool to aid fine-mapping of GWAS loci with structural variations"
https://www.biorxiv.org/content/10.1101/2025.09.03.674075v1?rss=1
charrveinThe Human Genome Structural Variation Consortium will meet at the University of Iceland on May 20. The following seminars will be open to all.
Starts with
"Genetic & epigenetic variation of centromeres in nearly complete human genomes” - Glennis Logsdon
See next toot.
The seminars take place at the Edda building on campus, room E103, from 14:00-16:00.
#genetics #humanGenetics #universityIceland #HGV #CNV #T2T #Genome #StructuralVariation #Iceland #Reykjavik
K. D. MurrayNew paper from my old group:
Long-read genome assemblies of 33 species of eucalypt (gum tree) from across Australia, encompassing ~70My of evolution. Key finding: macrosynteny is preserved, but microsynteny rampantly disrupted. Cool result given the propensity for inter-specific hybridization and gene flow.
Preprint here: https://www.biorxiv.org/content/10.1101/2023.04.19.537464v1
Feel free to reach out with any Q's!
#preprint #genome #trees #eucalyptus #genomics #genomeassembly #biorxiv #botany #synteny #structuralvariation
The Toot of GMODAt #PAG30 earlier this month, we presented a hands on #JBrowse2 tutorial, where the attendees could log into a server, run through setting up a JBrowse 2 instance and added quite a lot of data, including #synteny and #structuralVariation. A video of that tutorial and accompanying updated tutorial to make it easier to do "on your own" are now available at YouTube: https://youtu.be/0MtYsAFEMXI and the tutorial page is at http://gmod.org/wiki/JBrowse2_Tutorial_PAG_2023
JBrowse 2 tutorial PAG 2023
Lorena Derežanin 🧬Hi Mastodonts! 🙌
Time for a short #introduction I'm Lorena, a #computationalbiologist 💾 living in Berlin 🇩🇪
Currently, I'm patiently waiting to defend my PhD thesis in #evolutionarybiology My research focuses on #structuralvariation in mammalian #genomes and its #adaptive potential 🧬
Next month I'm joining Berlin Institute of Health as a #bioinformatician 🎉 Much excited!
Still can't believe we have a whole server dedicated to #genomics over here! How cool is that!🤓
Time for a short #introduction I'm Lorena, a #computationalbiologist 💾 living in Berlin 🇩🇪
Currently, I'm patiently waiting to defend my PhD thesis in #evolutionarybiology My research focuses on #structuralvariation in mammalian #genomes and its #adaptive potential 🧬
Next month I'm joining Berlin Institute of Health as a #bioinformatician 🎉 Much excited!
Still can't believe we have a whole server dedicated to #genomics over here! How cool is that!🤓