IAP proteins play central roles in regulating apoptosis - Lopes et al. show that IAP expansion in animals has repeatedly emerged through lineage-specific duplication events

πŸ”— https://doi.org/10.1093/molbev/msag078

#evobio #molbio

Goff et al. measure collateral fitness landscapes of TEM-1 Ξ²-lactamase in conditions expected to alter protein aggregation or stability, proposing that mutational destabilization is associated with deleterious collateral fitness effects.

πŸ”— https://doi.org/10.1093/molbev/msag106

#evobio #molbio

Environmental and mutational modulation of collateral fitness effects informs their mechanisms

Abstract. Fitness effects of mutations that do not arise from changes in a protein's ability to perform its physiological functions (called collateral fitn

OUP Academic

Li et al. present a genomic reassessment of the endangered black-and-white snub-nosed monkey, suggesting the species is divided into five genetically distinct clusters.

πŸ”— doi.org/10.1093/molbev/msag104

πŸ“· Xinming He

#evobio #molbio

The May issue of MBE is here, featuring the work of Topaloudis et al., who evaluated genotype imputation accuracy in a large barn owl low-coverage WGS dataset.

πŸ”— https://academic.oup.com/mbe/issue/43/5

πŸ“· Alex Labhardt

#evobio #molbio

Berruga-FernΓ‘ndez et al. show that bacterial hybrid chromosome formation driven by conjugative mobile genetic elements may be an important and widespread mechanism in the emergence and evolution of high-risk bacterial pathogens.

πŸ”— https://doi.org/10.1093/molbev/msag085

#evobio #molbio #bacteria

Ceriotti et al. investigate the rewiring of organellar translation in the holoparasitic Balanophoraceae, revealing extreme changes in the anciently conserved machinery of plant organellar translation.

πŸ”— https://doi.org/10.1093/molbev/msag077

πŸ“· Tuber and two inflorescences of the holoparasitic plant Lophophytum pyramidale collected from Parque Nacional Calilegua, Argentina

#evobio #molbio

Pinto et al. present SCINKD as a framework to identify unannotated sex chromosomes and curate diploid genome assemblies from a single individual.

πŸ”— https://doi.org/10.1093/molbev/msag067

#evobio #molbio #compbio

Sex chromosome identification and genome curation from a single individual with SCINKD

Abstract. In most animal species, the sex-determining pathway is typically initiated by the presence/absence of a primary genetic cue at a critical point d

OUP Academic

Cui et al. investigate the evolutionary trajectory leading to dim-light vision in vertebrates, concluding that it evolved via three main stages of molecular adaptation, at the origins of ancestral rhodopsin pigments.

πŸ”— https://doi.org/10.1093/molbev/msag096

#evobio #molbio #opsin

Cochetel & Cantu publish a new MBE Review on plant pangenomes, outlining major paradigms from gene-based catalogs to haplotype-resolved graphs, core and variable compartments, and how graph-based frameworks enable analyses that are difficult with single linear references.

πŸ”— https://doi.org/10.1093/molbev/msag087

#evobio #molbio #pangenome

PCR is a (Surprisingly) Near-Optimal Technology

Photonic PCR is a technology that can be used to do an entire PCR in about six minutes. But there are several reasons why it's unlikely to catch on.

Niko McCarty