Safeguarding spermatogenesis from retrotransposon insertions by forming ecDNA

Retrotransposon mobilization in germline cells enables the rewriting of genetic information to drive genome innovation, species evolution, and adaptation through the generation of de novo mutations. However, uncontrolled mobilization can cause DNA breaks and genome instability, often leading to sterility. How germ cells balance retrotransposon-induced genome innovation with the need for genomic integrity remains poorly understood. Here, we used Drosophila spermatogenesis as a model to investigate retrotransposon mobilization dynamics. Although many retrotransposon families are transcriptionally active, we found that the LTR-retrotransposon nomad completes the full mobilization cascade—including mRNA export, protein translation, and reverse transcription—to produce double-stranded DNA (dsDNA) the most efficiently. Strikingly, despite successfully generating dsDNA, nomad rarely achieves genomic reintegration. Instead, its newly synthesized DNA predominantly forms extrachromosomal circular DNA (ecDNA). These findings suggest that ecDNA formation acts as a protective mechanism to sequester retrotransposon-derived DNA and prevent widespread genomic integration during spermatogenesis, thereby preserving genome stability while allowing limited retrotransposon activity.

bioRxiv
The papers, published simultaneously in Nature on Nov. 6, detail the prevalence and prognostic impact of the circles, called #ecDNA for extrachromosomal DNA, in nearly 15,000 human #cancers; highlight a novel mode of inheritance that overthrows a fundamental law of genetics; and describe an anti-cancer therapy targeting the circles that is already in clinical trials. https://mastodon.social/@ScienceScholar/113461015147098700

Extrachromosomal #DNA in form of tiny DNA circles could be key drivers of #cancer. It looks strangely similar to the DNA of most bacteria which is contained in single circular molecules, the bacterial chromosome.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338009/

This recent paper is unfortunately behind a paywall. It is named "Extrachromosomal DNA in cancer"
https://www.nature.com/articles/s41568-024-00669-8

This article is a bit more accessible. After stem cells #ecDNA is the new hope of cancer researchers
https://www.the-scientist.com/cancer-may-be-driven-by-dna-outside-of-chromosomes-68590

Extrachromosomal DNA (ecDNA) in cancer: mechanisms, functions, and clinical implications

Extrachromosomal DNA (ecDNA) is circular DNA that plays an important role in the development and heterogeneity of cancer. The rapid evolution of methods to detect ecDNA, including microscopic and sequencing approaches, has greatly enhanced our knowledge ...

PubMed Central (PMC)
Postdoc Position in Cancer Extrachromosomal DNA Biology, Sihan Wu Lab

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Postdoc Position in Cancer Extrachromosomal DNA Biology, Sihan Wu Lab

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‘Bond villain’ DNA could transform cancer treatment, scientists say

Discovery that extrachromosomal DNA act as cancer-causing genes seen as breakthrough that could lead to new therapies

The Guardian