nf-coreSep 5, 2024

Pipeline release! nf-core/isoseq v2.0.0 - nf-core/isoseq v2.0.0 - Sapphire Duck [05/09/2024]!

Please see the changelog: https://github.com/nf-core/isoseq/releases/tag/2.0.0

#isoseq #isoseq-3 #rna #tama #ultra #nfcore #openscience #nextflow #bioinformatics

Release nf-core/isoseq v2.0.0 - Sapphire Duck [05/09/2024] · nf-core/isoseq

New entrypoint option to skip isoseq pre-processing. Update the pipeline to nf-core 2.14.1. Update modules. nf-validation version pinned PR25 Upgrade from isoseq3 to isoseq (version 4) Fix segmenta...

GitHub
Show threadMultiQCFeb 28, 2024

The new modules are to support @PacBio #IsoSeq cluster / refine and @10xGenomics #SpaceRanger 🧬🔬

Many thanks to Sébastien Guizard and @grst for contributing these! 🙌🏻

We also have updates for... bcl2fastq, DRAGEN, Picard, fastp, HTSeq Count, Illumina InterOp Statistics, mosdepth, Picard, PURPLE, Samtools, UMI-tools and Whatshap.

So please check the changelog if you use these tools 🕵🏻‍♀️

António DominguesDec 23, 2022

@PacBio #longread crowd. Any good literature on differential isoform abundance analysis with long reads? #Isoseq in Human preferably.

Cheers.