| Website | https://multiqc.info |
| GitHub | https://github.com/ewels/MultiQC |
| https://twitter.com/MultiQC |
Modules #QUAST and #Trimmomatic got minor updates, and #VEP and #BclConvert got bugfixes. There were also a number of tweaks and fixes for AI summaries ✨
See the full changelog here: https://github.com/MultiQC/MultiQC/releases/tag/v1.28
Ever wanted to set report Toolbox settings from the CLI whilst generating reports? (highlight, hide, and rename samples) Now you can! We finally closed this ancient issue from 2016 🧓🏻🌈🎉 https://github.com/MultiQC/MultiQC/issues/132
See the docs to get started: https://docs.seqera.io/multiqc/getting_started/config#toolbox-settings
It would be nice to be able to set front end tool settings before running MultiQC. Makes it easier to share (no messing around with JSON config files) Enables highlighting etc. on templates with fl...
Another quality of life improvement is that we now have a #JSONschema via @pydantic for #MultiQC configuration files 🎉
This has been added to schemastore.org so that config files in #VSCode & other IDEs automatically get integrated error checking as you type, see https://docs.seqera.io/multiqc/getting_started/config#json-schema-validation
Did you see, #MultiQC v1.28 went out a few days ago!
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
We're really excited to hear what folks make of the new #MultiQC functionality. Give it a try now with v1.27 and check out the documentation at https://docs.seqera.io/multiqc/ai
We made this functionality as flexible as possible. It works out of the box with #Seqera AI and also #OpenAI and #AnthropicAI.
Reports also have "Copy prompt" options to paste into whatever LLM you like.
Read more in the blog post: https://hubs.ly/Q033KvM10
MultiQC v1.27 was released yesterday. It includes one major new feature:
=== ✨ AI summaries ✨ ===
LLMs are a natural next step for helping scientists understand large datasets. @multiqc now has built-in integration with #Seqera AI as well as #OpenAI and #AnthropicAI 🤖
The premise is fairly simple:
#MultiQC builds prompts with sample data and sends these to LLMs to get summaries.
This can be done at report-generation time and also *interactively* on-demand when reading the report.
And finally a bunch of core improvements! #Python 3.13 now officially supported, and 3.8 dropped. Tooltips, improved memory efficiency, properly sorted samples and strings, default settings for @cursor_ai editor and more!
🆕 10 new modules supporting new tools in this release:
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
💫 12 modules updated with features, tweaks and fixes:
- GATK BQSR
- Pychopper
- fastp
- RNA-SeqC
- phantompeakqualtools
- QualiMap RNASeq
- QualiMap BamQC
- DRAGEN
- Interop
- Dedup
- Bclconvert
- Nanostat
Maxime Garcia
